PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615088.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26871.2 Da    PI: 7.0595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs+tgklye++s
  XP_009615088.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNTGKLYEFCS 59
                    79***********************************************96 PP
2K-box93.24.5e-31821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++++++ +qe+ +Lk ++e+Lq++qRh+lGedL++Ls k+L+qLe+qL++sl++iRs++++++l+q+ elq+ e++l e nk+Lr+k+ee
  XP_009615088.1  82 QPSTDSQNTYQEYLNLKTRVEMLQQSQRHVLGEDLGQLSNKDLEQLERQLDSSLRQIRSTRTQHMLDQLTELQQTEESLTEMNKSLRMKFEE 173
                     567889***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.641161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-34282IPR002100Transcription factor, MADS-box
CDDcd002651.80E-45276No hitNo description
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2583171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.19287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN TGKLYEFCSS  60
SSMPTTLERY HRYNYAAVEG SQPSTDSQNT YQEYLNLKTR VEMLQQSQRH VLGEDLGQLS  120
NKDLEQLERQ LDSSLRQIRS TRTQHMLDQL TELQQTEESL TEMNKSLRMK FEELGVALQT  180
SWQSGQQQPD GFFHPVASNN SMPIRYNTVL PENAEPSTQH ATGVVPGYRF DIGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-27751711101Developmental protein SEPALLATA 3
4ox0_B2e-27751711101Developmental protein SEPALLATA 3
4ox0_C2e-27751711101Developmental protein SEPALLATA 3
4ox0_D2e-27751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4485221e-179AF448522.1 Lycopersicon esculentum MADS-box transcription factor MADS-RIN (MADS-RIN) mRNA, complete cds.
GenBankAF4485231e-179AF448523.1 Lycopersicon esculentum MADS-box transcription factor MADS-rin mRNA, complete cds.
GenBankDQ1577951e-179DQ157795.1 Lycopersicon esculentum cultivar Pusa Ruby MADS-box transcription factor MADS-RIN mRNA, complete cds.
GenBankDQ1577961e-179DQ157796.1 Lycopersicon esculentum cultivar Punjab Kesari MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615088.11e-176PREDICTED: MADS-box protein CMB1-like isoform X1
SwissprotK4BND81e-110MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1J6HU041e-152A0A1J6HU04_NICAT; Developmental protein sepallata 1
STRINGXP_009615088.11e-176(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.27e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]