PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 221aa MW: 24304.1 Da PI: 8.4927

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009614946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	30	78	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +gr++AeIrd ++ ++r++lg+f++aeeAaka++aa++ l+g XP_009614946.1 30 FRGVRKRQ-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAAKAYDAAARTLRG 78 8**888.******883....5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.87E-17	29	86	No hit	No description
Pfam	PF00847	2.3E-12	29	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.893	29	86	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-36	29	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-10	30	41	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-21	30	87	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.9E-31	30	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-10	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MRRGRATAAA KQAAEASPAA GSGGLKDIRF RGVRKRQWGR FAAEIRDPWK KTRVWLGTFD 60 SAEEAAKAYD AAARTLRGPK AKTNFPLPPY SHFNQTINPN GPFIDPRLYS QENHPIVIQR 120 PTSSSMSSTV ESFSGPRPPP RQQTAVLPSR KHPRSPPVVP DDCRSDCDSS SSVVEDGDCD 180 NDNENDNIVS SAFRKPLPFD LNFPPPMDAD SDDLHCTALC L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-18	26	87	2	64	ATERF1
3gcc_A	4e-18	26	87	2	64	ATERF1
5wx9_A	4e-18	24	86	9	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00194	DAP	Transfer from AT1G50640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB669086	0.0	AB669086.1 Nicotiana tabacum NtERF#229 mRNA for ethylene response factor #229, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312757.1	1e-162	ethylene-responsive transcription factor 3-like
Refseq	XP_009614946.1	1e-162	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	Q9SXS8	3e-73	ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBL	R4WAK0	1e-161	R4WAK0_TOBAC; Ethylene response factor #229
STRING	XP_009614946.1	1e-162	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3330	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	7e-31	ethylene responsive element binding factor 3