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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009614938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27882.2 Da PI: 9.9331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.2e-07 | 85 | 131 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er RR++ ++++ L +llP +K +K +i++ Av I++Lq XP_009614938.1 85 KHMIKERIRREKQKQSYLALHKLLPMG-----TKGEKNAIVQTAVMRIQELQ 131 68899********************97.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-11 | 76 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-6 | 79 | 132 | No hit | No description |
PROSITE profile | PS50888 | 11.103 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-7 | 85 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-4 | 85 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEEFFQVQSS QANGEVLWFE NEAFFVNQSA FVSFRNKPIE GFGVSGYGNV SANHRNMNKR 60 MMEFLKKSWI PKVGEVKMEK EKVHKHMIKE RIRREKQKQS YLALHKLLPM GTKGEKNAIV 120 QTAVMRIQEL QKYKESLKKR NDELQMILAE GEKEEFEKAK IKVKVNYPIS GVDSMLEVLK 180 CLKNCGTKAN AMQSSFSQQE FSSMLEIETK IGAAEVEKTV QNTLFETERN FRAHQLPMTW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB258537 | 0.0 | AB258537.1 Nicotiana tabacum WIN4 mRNA for basic helix-loop-helix protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614938.1 | 1e-177 | PREDICTED: transcription factor bHLH92 | ||||
TrEMBL | A0A1S3ZD67 | 1e-162 | A0A1S3ZD67_TOBAC; transcription factor bHLH92-like | ||||
STRING | XP_009614938.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12463 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-29 | bHLH family protein |