 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009614096.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Trihelix |
| Protein Properties |
Length: 320aa MW: 35224.7 Da PI: 8.4544 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009614096.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 46.8 | 7.8e-15 | 59 | 149 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ +++Liea + +l+rg+l++++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + +s +p+f+ l+
XP_009614096.1 59 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYVSPWPFFNGLD 149
7*************************************999987778889**********************9999999999******997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MSDDDLVASP SSNNNSSSLP PSPSPPPPST NTELAIPPPP PTIQPASTRP AAFPAREDCW 60
SEAATHTLIE AWGSHYLELK RGNLRQKHWQ EVANAVNALH GHTKKQYRTD IQCKNRIDTL 120
KKKYKIEKAR VSQSHGRYVS PWPFFNGLDD LIGDNFKSSP APVTVAPRRK TPPMLLPLPS 180
AVPVGPRSKR PAASMEDTVS RRNFSAMAAA AAAAASEESD EEEESETSSP AAITLAGARK 240
EESGALAEGC SRLAEAIGRF AEIYERVEDA KQRQMVELEK QRMQFAKDLE IQRMKLIMES 300
QVQLEKLKRA KSNSQADGYL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB072391 | 0.0 | AB072391.1 Nicotiana tabacum NtSIP1 mRNA for 6b-interacting protein 1, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 2e-75 | sequence-specific DNA binding transcription factors |
