PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613656.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 830aa    MW: 93636.8 Da    PI: 9.9263
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.6e-1216103398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     k+    + ++ +rl++pk+fa+++ ++  ++  + le +sg++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v++f
  XP_009613656.1  16 KII--FSQHECSRLRIPKDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLIFGYNARSHF--NVTIF 102
                     555..23444568***********5454444..***************..999999**************************999999..99998 PP

                     - CS
              B3  98 r 98 
                     +
  XP_009613656.1 103 D 103
                     7 PP
2B347.33.8e-15269361498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ps+v++   l++  +fa ++ +++ ++  l++  +   sW+vk+  + ++      +GWk Fv +n+Lk gD++vF++++ ++    v++fr
  XP_009613656.1 269 FMQPSYVFSPFHLSIALNFAGKYFLENYGNLVLRVPGRGRGSWSVKC--TTRGTNAKVHSGWKAFVLDNKLKCGDVCVFEVIKGTRLFIDVTIFR 361
                     6789*******************88888887888888888*******..66666677899********************987655556677766 PP
3B342.61.1e-13534624599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ps+v++  rl ++  fa+++ +++ ++  l+l+ +   sW vk+    ++ ++ ++  Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009613656.1 534 MQPSYVSTPYRLHISFLFARKYFLEE-CG-NLVLRVPGRGSWPVKYALGISKTQICFS--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRA 624
                     6799******************9884.44.8***************999999999998..*********************88777788888885 PP
4B351.12.4e-16735821794
                     .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ps+v++     +l++  + a+++     ++ +++l+ +s +sW vk+i   +     lt+GWkeFv +n+Lk+gD++vF++++rs+  ++v
  XP_009613656.1 735 PSYVSSAsgpMQLSITLSRARKFFAT--RHSDVVLKVSSKKSWAVKCIL--GTANAKLTSGWKEFVLDNNLKVGDVCVFERVSRSKLLFNV 821
                     44444445567899999999999755..4558***************65..333346***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-188105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-188105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.06812105IPR003340B3 DNA binding domain
CDDcd100171.63E-1112103No hitNo description
SMARTSM010192.1E-915105IPR003340B3 DNA binding domain
PfamPF023626.8E-915103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-20258363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-18259362IPR015300DNA-binding pseudobarrel domain
CDDcd100179.17E-16264361No hitNo description
SMARTSM010194.3E-10266363IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237266363IPR003340B3 DNA binding domain
PfamPF023624.5E-12268361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18523624IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18524624IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.265530625IPR003340B3 DNA binding domain
SMARTSM010192.6E-12533625IPR003340B3 DNA binding domain
CDDcd100175.13E-17534623No hitNo description
PfamPF023621.1E-10534624IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-22721825IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-20722825IPR015300DNA-binding pseudobarrel domain
CDDcd100174.35E-15727824No hitNo description
SMARTSM010192.7E-9732827IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774732827IPR003340B3 DNA binding domain
PfamPF023622.0E-14740823IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MAAKPQLQIP QPKFFKIIFS QHECSRLRIP KDFASRYCKN MLNPVYLEVP SGEVWEVEVV  60
HSQGQICLGI GWQDFSDFYS ISCGHFLIFG YNARSHFNVT IFDLSASEIE YPYSSAHGIH  120
TPISHCHETR CAPKRDQSES DDTVEILEDI PRSQKAKAII PDTVEHSVEN LCHCPLEQSS  180
KRKRQERNAE DVVSVDMHVK RMKVEKLQED VASPSFIREG QKSNKGCRMH KQQSDSVYGQ  240
NKTVMDKERA VAYQRAKAFK SKNPFIISFM QPSYVFSPFH LSIALNFAGK YFLENYGNLV  300
LRVPGRGRGS WSVKCTTRGT NAKVHSGWKA FVLDNKLKCG DVCVFEVIKG TRLFIDVTIF  360
RAAGSTLMHK IVGEVPGGSD SKSKVIKTDS SVPCSQRKVV HTKKLKQRTG GSYGFYSKIK  420
EHGEGTEIEH SVEICGHCPL GQGSKRKRSE GKTKDDVSID IHTKSIKVEN TQEDVASPSF  480
TRKTKKSGES CRMDKQQSKM VYDKNKTVLD KERTVPYQRA KTFKCENPYV MYFMQPSYVS  540
TPYRLHISFL FARKYFLEEC GNLVLRVPGR GSWPVKYALG ISKTQICFSW KAFVLDNKLK  600
FGDVCVFELI KGTKPILDVT IFRAAESKAM HKIDGKLAGV SDSKNKTIKT EKSIPCSQPK  660
IVHSRKLNLE KKQKGDSDGL TSKIKEEFSE DTGKHVQQSK SSCKGSEVAK EMVLAYQRAK  720
AFTSENPFFI CFMQPSYVSS ASGPMQLSIT LSRARKFFAT RHSDVVLKVS SKKSWAVKCI  780
LGTANAKLTS GWKEFVLDNN LKVGDVCVFE RVSRSKLLFN VIIFTSAEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1523582818144B3 domain-containing transcription factor VRN1
4i1k_B1e-1523582818144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181202RKRQERNAEDVVSVDMHVKRMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613656.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S4BPE80.0A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-40B3 family protein