PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009613500.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 316aa MW: 34283.9 Da PI: 7.2759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009613500.1 137 YECKTCNRTFPSFQALGGHRTSH 159 99*********999998888777 PP
2	zf-C2H2	13.6	0.00019	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_009613500.1 216 HECSICGAEFSSGQALGGHMRRH 238 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.07E-9	136	159	No hit	No description
Pfam	PF13912	1.0E-12	136	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.059	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.72	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.07E-9	211	238	No hit	No description
SMART	SM00355	0.01	216	238	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	8.2E-13	216	240	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.827	216	243	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEFSEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGSG GSDDIGGGGE 60 FYSSTVQYSP TTSSTQISTS SEEDEDMANC LILLAQSGRC QKLQVESTER KMVKISSRKF 120 TEMATSTTGG KTGFYVYECK TCNRTFPSFQ ALGGHRTSHK KAKTIVEEKK STADSENHDR 180 QYLQEEEKLN KIITPTQIVN KGNYSHGNLN SKQKIHECSI CGAEFSSGQA LGGHMRRHRP 240 PPTITATNST KVTDETTSES SHDDEDSNKE KPRIILSLDL NLPAPPEDDH RDSKFGFSAN 300 KQSLVFSAAA LVDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	8e-87	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613500.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S4B4T4	0.0	A0A1S4B4T4_TOBAC; zinc finger protein ZAT5-like
STRING	XP_009613500.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-53	C2H2 family protein