PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 316aa    MW: 34283.9 Da    PI: 7.2759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009613500.1 137 YECKTCNRTFPSFQALGGHRTSH 159
                     99*********999998888777 PP

2zf-C2H213.60.00019216238123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_009613500.1 216 HECSICGAEFSSGQALGGHMRRH 238
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.07E-9136159No hitNo description
PfamPF139121.0E-12136161IPR007087Zinc finger, C2H2
SMARTSM003550.059137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576675.07E-9211238No hitNo description
SMARTSM003550.01216238IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-13216240IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFSEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGSG GSDDIGGGGE  60
FYSSTVQYSP TTSSTQISTS SEEDEDMANC LILLAQSGRC QKLQVESTER KMVKISSRKF  120
TEMATSTTGG KTGFYVYECK TCNRTFPSFQ ALGGHRTSHK KAKTIVEEKK STADSENHDR  180
QYLQEEEKLN KIITPTQIVN KGNYSHGNLN SKQKIHECSI CGAEFSSGQA LGGHMRRHRP  240
PPTITATNST KVTDETTSES SHDDEDSNKE KPRIILSLDL NLPAPPEDDH RDSKFGFSAN  300
KQSLVFSAAA LVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755188e-87HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613500.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S4B4T40.0A0A1S4B4T4_TOBAC; zinc finger protein ZAT5-like
STRINGXP_009613500.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-53C2H2 family protein