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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 34283.9 Da PI: 7.2759 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009613500.1 137 YECKTCNRTFPSFQALGGHRTSH 159 99*********999998888777 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 216 | 238 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_009613500.1 216 HECSICGAEFSSGQALGGHMRRH 238 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.07E-9 | 136 | 159 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 136 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.07E-9 | 211 | 238 | No hit | No description |
SMART | SM00355 | 0.01 | 216 | 238 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.2E-13 | 216 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 216 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 218 | 238 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEFSEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGSG GSDDIGGGGE 60 FYSSTVQYSP TTSSTQISTS SEEDEDMANC LILLAQSGRC QKLQVESTER KMVKISSRKF 120 TEMATSTTGG KTGFYVYECK TCNRTFPSFQ ALGGHRTSHK KAKTIVEEKK STADSENHDR 180 QYLQEEEKLN KIITPTQIVN KGNYSHGNLN SKQKIHECSI CGAEFSSGQA LGGHMRRHRP 240 PPTITATNST KVTDETTSES SHDDEDSNKE KPRIILSLDL NLPAPPEDDH RDSKFGFSAN 300 KQSLVFSAAA LVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 8e-87 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613500.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1S4B4T4 | 0.0 | A0A1S4B4T4_TOBAC; zinc finger protein ZAT5-like | ||||
STRING | XP_009613500.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-53 | C2H2 family protein |