PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 280aa MW: 31540 Da PI: 7.2916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 112 | 131 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ XP_009613284.1 112 FSCAVCNKTFNRFNNMQMHM 131 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.5e-05 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F + + ++H +++ XP_009613284.1 197 FTCRKCGKNFAVRGDWRTHEKNC 219 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.92E-5 | 109 | 133 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 112 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.64 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 160 | 192 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.85E-6 | 178 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 183 | 217 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.663 | 197 | 217 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 55 | 197 | 217 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MQTHSITYLF SSESACLETE AEDELSTVLS LGPPGQINLQ KNTTKFHFQS YYNQYSSCGE 60 GVTVALHTDS SGTSSNNNNP SKNKGDNIIS VANNGQYWIP TPAQILVGPT QFSCAVCNKT 120 FNRFNNMQMH MWGHGSQYRK GPDSLKGTKP ASSMLRLPCY CCAEGCKNNI DHPRSKPLKD 180 FRTLQTHYKR KHGAKPFTCR KCGKNFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH 240 VRAFGDGHAP HSENSYYNVE GEDENEDEEE DVEAGEELEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-167 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613284.1 | 0.0 | PREDICTED: zinc finger protein WIP6 | ||||
Refseq | XP_016493166.1 | 0.0 | PREDICTED: zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 1e-116 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A1S4BWA5 | 0.0 | A0A1S4BWA5_TOBAC; zinc finger protein WIP6-like | ||||
STRING | XP_009613284.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-116 | C2H2-like zinc finger protein |