PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613237.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 283aa    MW: 32442.4 Da    PI: 9.1934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-1715104199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++  + + ks  l++p +f+++++++  ++ + tl+ +sg +W+vkl      ++ ++ +GW++F k+n+++ g+f++F++dg  +f  +++
  XP_009613237.1  15 FFKIF--NPTVKSE-LRIPAHFLRHISED--SPDKATLKCLSGGTWNVKL--HIDENGLLINQGWEKFHKDNHIEGGEFLLFRYDGALQF--TIR 100
                     77777..5555555.9*******999766..5668***************..888888**************************997777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_009613237.1 101 IFSK 104
                     9987 PP
2B370.81.8e-22180272198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l+  +v+ks+ + +pk+ +e+ +++ ++++t++l +++g++W+v++i +k  g + + +GWk+Fvk+n+LkegD++vF+l++  + el+v+
  XP_009613237.1 180 FVKCLKGYNVNKSCFIHVPKPLCEQLSES-ANKTTVVLSNSEGKQWKVNCILQK--GYHAFCGGWKQFVKDNKLKEGDVCVFQLVN--TNELKVS 269
                     788899999**************999655.4667****************5555..5578899********************987..5556999 PP

                     EE- CS
              B3  96 vfr 98 
                     vf+
  XP_009613237.1 270 VFD 272
                     998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-2012105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.49312105IPR003340B3 DNA binding domain
SuperFamilySSF1019367.32E-2013106IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1415105IPR003340B3 DNA binding domain
PfamPF023624.8E-1515104IPR003340B3 DNA binding domain
CDDcd100173.25E-1415103No hitNo description
Gene3DG3DSA:2.40.330.103.4E-26175272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-24175272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-22178272No hitNo description
SMARTSM010191.9E-15180274IPR003340B3 DNA binding domain
PfamPF023623.5E-20180272IPR003340B3 DNA binding domain
PROSITE profilePS5086315.312180274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTENALKKID RRAVFFKIFN PTVKSELRIP AHFLRHISED SPDKATLKCL SGGTWNVKLH  60
IDENGLLINQ GWEKFHKDNH IEGGEFLLFR YDGALQFTIR IFSKNGMERE VKSINMDKNQ  120
KASIFDMDKN QKMPPKYPYN SKFPKQTHVD VENGTEHETP RKKVALEKTE VLLTPDIPQF  180
VKCLKGYNVN KSCFIHVPKP LCEQLSESAN KTTVVLSNSE GKQWKVNCIL QKGYHAFCGG  240
WKQFVKDNKL KEGDVCVFQL VNTNELKVSV FDDPPESLLK LAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613237.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1S4CJU20.0A0A1S4CJU2_TOBAC; B3 domain-containing protein Os11g0197600-like
STRINGXP_009613237.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-21B3 family protein