PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009613235.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 113aa MW: 13238.9 Da PI: 5.7037

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.1	9e-20	29	108	15	99
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l++p +f++++ ++ + t +l+ +sg+ W++kl r ++ ++ ++GW++F+++++L+egDf++F++dg+ +f +v++f+k XP_009613235.1 29 ELRIPPEFVKHITEE--ATETTILKGPSGKHWNMKL--REDEEGlFFNAGGWNKFAREQQLEEGDFLLFQYDGNITF--HVRIFNK 108 488****777644..4458999********..888888677789*****************997777..99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.2E-23	12	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-24	13	110	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.298	15	109	IPR003340	B3 DNA binding domain
CDD	cd10017	6.33E-17	16	107	No hit	No description
SMART	SM01019	2.5E-16	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-17	29	108	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVRKSSSSSI PRDDSPCFYK VIFDPRVEEL RIPPEFVKHI TEEATETTIL KGPSGKHWNM 60 KLREDEEGLF FNAGGWNKFA REQQLEEGDF LLFQYDGNIT FHVRIFNKNG LER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613235.1	4e-80	PREDICTED: B3 domain-containing protein Os01g0723500-like
Refseq	XP_016501188.1	4e-80	PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBL	A0A1S4CJ43	9e-79	A0A1S4CJ43_TOBAC; B3 domain-containing protein Os01g0723500-like
STRING	XP_009613235.1	2e-79	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	3e-16	B3 family protein