PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613233.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 639aa    MW: 72462.5 Da    PI: 8.8442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1139126598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ++v   g+l++p +f++ehg +     t++l  ++   W v +  +k +++++l +GW+eF +   +    f++Fk+ ++s f   v++f+
  XP_009613233.1  39 IVEPSVIDDGQLRMPDPFVQEHGDE--LLDTVKLIVPTDDFWGVSV--KKAGKMIWLHDGWREFMEHYSIGCWYFLLFKYGKNSHF--DVHIFD 126
                     56789999**************865..667****************..********************************998999..999887 PP
2B371.88.8e-23328420196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f ++l+  +  ++++l +p +f++e++ k  +s  + l+d+ g++W+ ++  ++++ + +l++GW +Fv++ngL +gD++vF+l+++ ++ el++
  XP_009613233.1 328 FMQILVEYNIVRNCILNIPADFVREYMPK--TSELIELQDSAGNKWKARC--NRRRMQLFLSGGWFKFVRDNGLLVGDVCVFELIKDlQTDELML 418
                     5667777788899*************855..5679***************..********************************99888887776 PP

                     EE CS
              B3  95 kv 96 
                     kv
  XP_009613233.1 419 KV 420
                     65 PP
3B357.72.2e-185406201396
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                     + +l++p +f+++++ k  +s+ + l+d++g++W+  +   +++  ++l+kGW +Fv++n+L +gD++v +l+++ +  el++kv
  XP_009613233.1 540 NYILYIPPEFVRDYMPK--TSVPVELQDSDGNKWNTHC--VRRKTLMFLSKGWVKFVRDNDLLVGDTCVVELINDiQADELMLKV 620
                     5679**********844..7889***************..77777899***********************99888777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-1731128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1633128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.46135128IPR003340B3 DNA binding domain
SMARTSM010191.6E-736128IPR003340B3 DNA binding domain
CDDcd100171.16E-1238126No hitNo description
PfamPF023623.3E-838126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-26319425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-25321424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-23326424No hitNo description
SMARTSM010199.2E-21328426IPR003340B3 DNA binding domain
PROSITE profilePS5086316.229328426IPR003340B3 DNA binding domain
PfamPF023623.1E-20328420IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-22521626IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-23523625IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-22526624No hitNo description
SMARTSM010191.9E-13528626IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734528626IPR003340B3 DNA binding domain
PfamPF023621.5E-16541620IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MVNALFSANF STGKSLISAN AVRMEPRTYS YSSASFYVIV EPSVIDDGQL RMPDPFVQEH  60
GDELLDTVKL IVPTDDFWGV SVKKAGKMIW LHDGWREFME HYSIGCWYFL LFKYGKNSHF  120
DVHIFDLNAT EIDYQCKDHG NAKLGAISQS LSYGKEIICY VGDDKDDESS VEIVDPLVTE  180
QGPESSAKSS GAKRHKIASG RSKFRHWEEF RSNKLHDEGR VSNEKNLNIS GDSNLTKPLM  240
GKLVQQNMDT PIYSSAVTGG VANPNNAQEG NKNDILQLNE NTRKSFTGQQ WEKPVGRGRP  300
HKIGRAKATE MNTAIIAAKM FKPENPYFMQ ILVEYNIVRN CILNIPADFV REYMPKTSEL  360
IELQDSAGNK WKARCNRRRM QLFLSGGWFK FVRDNGLLVG DVCVFELIKD LQTDELMLKV  420
HIFRSRVEEN STNLQTSSVS EPTLSIGKNC LQFNESKHTG TSDAFGPVSS NRSNCKNDTK  480
KSFTGQQQEK SVGRGKPYNP RKRGRPRAAE ANMATNAAKM LMPANPYFMT ILGVYNIVRN  540
YILYIPPEFV RDYMPKTSVP VELQDSDGNK WNTHCVRRKT LMFLSKGWVK FVRDNDLLVG  600
DTCVVELIND IQADELMLKV HIFRATRKKN QQIDTLVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1930862429141B3 domain-containing transcription factor VRN1
4i1k_B5e-1930862429141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613233.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S4CJK20.0A0A1S4CJK2_TOBAC; B3 domain-containing transcription factor VRN1-like
STRINGXP_009613233.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-42B3 family protein