PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 375aa MW: 43796.4 Da PI: 4.9449 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56 | 7.4e-18 | 11 | 97 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk + p++ +s+ l +p f+ e+ +gk +k ++l+d+ g++W ++l kk++ ++++GW +F ++n L+ gDf++F +dg+ f +k XP_009613231.1 11 FFKFFYPEN--SSQKLKIPTAFT-EYkNGK--LPKRISLRDRFGNVWPIEL--AKKGRDLYFQDGWVKFIEDNSLEFGDFLIFDYDGSGVF--DFK 97 677775544..44559******9.563555..8889***************..********************************997666..444 PP | |||||||
2 | B3 | 32.4 | 1.7e-10 | 278 | 354 | 10 | 89 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + ++++l++p + +++++++ + ++ ++d++gr++e +++++k + r++l+kGW++ ++ n ++ D ++ ++++ + XP_009613231.1 278 AKRRDQLYVPVDVVRDYNLE--LPPKMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNLVEKEDRCICEFMRGKA 354 567899***********776..6679***************999985.89********************9999876533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.339 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-21 | 10 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.78E-13 | 11 | 99 | No hit | No description |
SMART | SM01019 | 1.2E-14 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-16 | 11 | 94 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-16 | 265 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-16 | 265 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.277 | 269 | 366 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.22E-7 | 270 | 362 | No hit | No description |
SMART | SM01019 | 0.0018 | 272 | 363 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-8 | 279 | 352 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDDAKKMEKG FFKFFYPENS SQKLKIPTAF TEYKNGKLPK RISLRDRFGN VWPIELAKKG 60 RDLYFQDGWV KFIEDNSLEF GDFLIFDYDG SGVFDFKLLG KTACEKKGAG VAVKVEEEEM 120 INIAHRKSEK PKGKKYLASD SISSSSSSYG DEDEEYMVEE EQEDEEEEYE EETNGKAIVI 180 CKKKAPCSKG SYVEEEKEDD DEDEEEEYEE DEEETEEEEK NNEKARMLKK KALCSKGVFK 240 RATTIKRRDV PDQYGAEIFR SGRATQPKNP YFVAKIRAKR RDQLYVPVDV VRDYNLELPP 300 KMFFRDSEGR KFETEVNIWK DGRIWLKKGW RKICRWNLVE KEDRCICEFM RGKANEVLYL 360 QVTLVKAGGV SNPVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-12 | 4 | 104 | 4 | 104 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613231.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g60140-like isoform X1 | ||||
Refseq | XP_016501190.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g60140-like | ||||
TrEMBL | A0A1S4CJ09 | 0.0 | A0A1S4CJ09_TOBAC; B3 domain-containing protein At5g60140-like | ||||
STRING | XP_009613231.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-17 | B3 family protein |