PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009613191.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 289aa MW: 33303.5 Da PI: 9.8206

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.9e-27	31	117	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_009613191.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPL 117 7****************************************999.99999********************************98 PP
2	FAR1	87.7	1.8e-27	182	269	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++gk+++t++e++HnH+l XP_009613191.1 182 WYNEYAAAMGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGKFRITSFEEKHNHPLD 269 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-24	31	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-24	182	270	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLPSS 120 LSHMLPSQRK INVAQAHEVT ARYGHLCQNR FMEITSSESQ GGCNVPIKLG MEFDSDEHAY 180 EWYNEYAAAM GFSVRKEYAN KNKVQGYVTS RKFTCHKEGY RSKDKRDRTV QKHRKETRTG 240 CLAHIIISRQ SNGKFRITSF EEKHNHPLDP SSLSHVLPTQ RKIKVAQST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613191.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_009613192.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_009613193.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_009613195.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1S4B8Y8	0.0	A0A1S4B8Y8_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1S4B924	0.0	A0A1S4B924_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X3
STRING	XP_009613191.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-28	FAR1-related sequence 7