PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009613092.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 394aa MW: 45067.1 Da PI: 7.9822

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1.1e-49	40	165	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_009613092.1 40 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSES 133 79*************************.89***********888889************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +++W+m+eyrl XP_009613092.1 134 SRPIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 165 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.624	39	186	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-56	39	186	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	41	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MAIAPFTSMS QSQQQQDDSS SNKRDHDHDA DDEHEHDMVM PGFRFHPTEE ELVEFYLRRK 60 VEGKRFNVEL ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW 120 KATGADRMIR SESSRPIGLK KTLVFYSGKA PKGIRSSWIM NEYRLPHHET ERLQKAEISL 180 CRVYKRPGVE DHPSLPRSLP TTRASSSSSS RAHNSIIKKH HHPQVVQDPL LLSPNYVGQS 240 NSQQIDEKLN ENSTASSTST DHHHHHRHVG TSLGLSSHQI TALTTSTITP FSSLISPNNT 300 AAVDDLQRLV NFQNLHNHQQ HFQNLSNHNI PAASIATHQF STLLQPQLAP QQPQPNLLLQ 360 GSLQPSAFSE RLWDWNSVQT DGSCKDYQPN NPFK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MAIAPFTSMS QSQQQQDDSS SNKRDHDHDA DDEHEHDMVM PGFRFHPTEE ELVEFYLRRK  60
VEGKRFNVEL ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW  120
KATGADRMIR SESSRPIGLK KTLVFYSGKA PKGIRSSWIM NEYRLPHHET ERLQKAEISL  180
CRVYKRPGVE DHPSLPRSLP TTRASSSSSS RAHNSIIKKH HHPQVVQDPL LLSPNYVGQS  240
NSQQIDEKLN ENSTASSTST DHHHHHRHVG TSLGLSSHQI TALTTSTITP FSSLISPNNT  300
AAVDDLQRLV NFQNLHNHQQ HFQNLSNHNI PAASIATHQF STLLQPQLAP QQPQPNLLLQ  360
GSLQPSAFSE RLWDWNSVQT DGSCKDYQPN NPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	41	186	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	41	186	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	41	186	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	41	186	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	41	186	19	165	NAC domain-containing protein 19
4dul_B	2e-55	41	186	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613092.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-120	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1S4D739	0.0	A0A1S4D739_TOBAC; NAC domain-containing protein 19-like
STRING	XP_009613092.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-116	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]