PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 159aa MW: 18153.2 Da PI: 10.3784

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.4	1e-14	51	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ + Aa a++ a++k++g XP_009613047.1 51 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEGAAAHAYDLAALKYWG 110 57*****************999955656446******6699*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.3E-11	51	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-16	51	120	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.309	52	118	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-25	52	124	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.2E-16	52	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-6	53	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-6	100	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MAKLSQQNQR NSSNNISNNA NTNITTTNGS VLKVKRTRKT VPRDSPPQRS SIYRGVTRHR 60 WTGRYEAHLW DKNCWNESQN KKGRQVYLGA YDDEGAAAHA YDLAALKYWG SETILNFPLS 120 TYEKEIIEME GQSREEYIGS LRRKSSGFSR GVSKYRGVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613047.1	1e-116	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060, partial
Swissprot	Q94AN4	7e-67	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A1U7Y412	3e-94	A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRING	XP_009613047.1	1e-115	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15855	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	8e-67	ARIA-interacting double AP2 domain protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]