PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612948.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 444aa    MW: 49568.2 Da    PI: 6.0238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08275322455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009612948.1 275 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 322
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-16269341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-9269326No hitNo description
PROSITE profilePS5088815.25271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16271340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5275322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDKKNMFLNN VNTMNELNCF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN SNNSSGDNFV  60
LRELIGKLGN ICNSGEISPN SYVNSTNNSC YTTPLNSPPR LNLSNFDHQI NGNLQLLGVN  120
HLPNSTNLAH FSVDSEYVNR NVQNLESGKL SRVSSSKCIN VSGSQLGVQE FKESEFGESM  180
ENSSVSEQIP LGNDANSKKR KSAPKKKAKE TIAKNANVST ENNESSAKRS KSDEKNGSDI  240
DAAETKEQNK DNPKTAEPPK DYIHVRARRG QATDAHSLAE RVRREKIGER MKFLQDLVPG  300
CNKVTGKAVM LDEIINYVQS LQCQVEFLSM KLSNMNPRMD FNTESLISKN MFQSAESLQH  360
NLHPSETSTA FPYEFQSQHC PNGYMARNVN IMQLPHMEEF VEQTPQVPTF FEDDLHSVIQ  420
MGFGQIQAQN FPGNMPSAQM KVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209PKKKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-39HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612948.10.0PREDICTED: transcription factor bHLH77-like
RefseqXP_016475478.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLA0A1S4AGC80.0A0A1S4AGC8_TOBAC; transcription factor bHLH77-like
STRINGXP_009612948.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-81bHLH family protein