PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612920.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 648aa    MW: 73780.3 Da    PI: 5.5551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       +  ++ +++l+++d++g++W++k+ ++++++r++lt+GW+ Fv +++L +gD vvF   +++
  XP_009612920.1 125 FCKALTTSDIKSNWGLSVHRKDANKCfppldmmQ--EKPTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWSTFVTSKKLLAGDLVVFL--RDE 215
                     99*****************************643..445569************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_009612920.1 216 TGKLHVGIRR 225
                     999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-35118237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-27120227IPR015300DNA-binding pseudobarrel domain
CDDcd100178.56E-19124225No hitNo description
PfamPF023621.9E-20125225IPR003340B3 DNA binding domain
SMARTSM010191.5E-16125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802125227IPR003340B3 DNA binding domain
PfamPF065073.4E-5250311IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVDLLGSNSQ LKHFEGDNAL CREIWRACSG SLLDVPKLGE RVHYFPRLHM DQLEQSSNLE  60
WIQGLQLSHL PRKILCRVLH IRLLVEHDTE EVYAETILLP NQEQNEPSTP EFCPLEPPRP  120
QYQSFCKALT TSDIKSNWGL SVHRKDANKC FPPLDMMQEK PTQELIVNDL QGNEWRFKHV  180
FQGQPRRHLL TNGWSTFVTS KKLLAGDLVV FLRDETGKLH VGIRRLSYQC NSVGSSTFSR  240
QSMEGVLAVA SHAFATRSLF SVYYKPCYNR SSQFIMSLSN YFEGGNHGPG VGTISRTQHS  300
SLDSHVKRTS GMDQMSFPQG QHKTNLLLEE DQYMQDSEAI SNSARPTMMA LEIGQQSVES  360
LNNIHHIEDS VLQPHTAVAR ENNERFIPNE TVAIQAQDEN FDELFKETDF PDFVNTSLDT  420
ITLDWDSDLR STIQDFDEWL EETNPPGLQT CSEDHSRQTS SILEQPTSSQ VMSISSTPSR  480
IPYEGPGRGD EQVPWGSYQV ARRCLPILNR VVSRYPDSLV NFKVTSSIFQ SVCLEILAEL  540
VYFLDNLTVM NLSKDQFNVA GQHLWDLKLS GIELGWLEKR LAHIDGAFSM ENVLQRRQVF  600
TLRMGDTLAT FRQLDEELGC INKELHQLSL KVGPNPPMRF HPVLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-881831117310Auxin response factor 1
4ldw_A3e-881831117310Auxin response factor 1
4ldw_B3e-881831117310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612920.10.0PREDICTED: uncharacterized protein LOC104106139 isoform X1
TrEMBLA0A1S4DDR90.0A0A1S4DDR9_TOBAC; Auxin response factor
STRINGXP_009612920.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1459378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.14e-93auxin response factor 11