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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27141.5 Da PI: 6.4117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.9e-05 | 35 | 84 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ + erE+ R+++N+ f L l + + + Ka+iL +A +++k++ XP_009612854.1 35 KRVHKAEREKLKREHLNELFLGLANALELS----EQMNGKASILNEAARFVKDM 84 79999**********************998....68899*********999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-10 | 31 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-4 | 32 | 89 | No hit | No description |
PROSITE profile | PS50888 | 10.671 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-7 | 35 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDTENPPIVE KDTTAVETSL DSSHLGKKNQ KKAPKRVHKA EREKLKREHL NELFLGLANA 60 LELSEQMNGK ASILNEAARF VKDMLSQIKH LRTENTTLLS ESQYLSVEKK ELQDETSALE 120 AEIGRLQNEV KAREAETNLD LNLAPPEIQH PEFASHNNYM RLPASEHAFQ DSQIMNPAYV 180 FPFSSNSQVY PAPDATKSTA TPTSTVKKPQ PRYPTPADVW PSQIFEKRPR LLGQEVQDGA 240 K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ423078 | 0.0 | DQ423078.2 Nicotiana tomentosiformis cultivar TA3349 DNA-binding protein (At3g47640) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612854.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_009612855.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_016492808.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_016492809.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_018629631.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_018629632.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like | ||||
TrEMBL | A0A1S4BVF1 | 1e-177 | A0A1S4BVF1_TOBAC; transcription factor bHLH47-like | ||||
STRING | XP_009612854.1 | 1e-177 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-46 | bHLH family protein |