PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612763.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 443aa MW: 50060.6 Da PI: 6.6727

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.6	9.7e-18	87	177	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v++ +l++p+kf++++ +k + t++l de+ +++ k+ ++k++ l++GW++F a++L egD++vF+l++ +f +v XP_009612763.1 87 FVKYMLHSHVSRGFWLSFPRKFCDSYL-PK-HDDTVVLVDENEEEFATKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPCKF--KVY 173 8999********************4.33.3459***********889998....***********************98888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009612763.1 174 IIRE 177 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-24	81	178	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-20	81	178	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.29E-26	85	176	No hit	No description
PROSITE profile	PS50863	12.153	87	178	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-21	87	178	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-16	87	177	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MAISAMNSSR KALSFLPQRV LEIKEKLLRK RALGPSKTNK VKNGDTKKLR ICPEKKTYKT 60 STVDANSSAM LRAEEVQANL PSHFPSFVKY MLHSHVSRGF WLSFPRKFCD SYLPKHDDTV 120 VLVDENEEEF ATKYLIDKNG LSGGWRGFSI AHNLLEGDVL VFQLIQPCKF KVYIIRENNL 180 TEIDGAISLL NLDFHARPIK SDQSEDMKIC EAKEQKYLEP PVHQDVKQEE AILIPDSDQG 240 PASDQCGSDS DNGSEVLSIR FSESRLEFKD VKDFSGFNIL VDGLIIDAEI PAHIRTKYYY 300 LCCTQKSFLH EHLLGGLNCK LAAGMITETV NIADAIRASK ISIPRDFLET WDNTLKGFEC 360 LGMEVGFLRA RLGKLINMSC ESDSILLSKR VELAEAKEEM RNLEEKVLKV KQVIQKLDSE 420 IEALTLKDTS FELKFKALAA APW

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MAISAMNSSR KALSFLPQRV LEIKEKLLRK RALGPSKTNK VKNGDTKKLR ICPEKKTYKT  60
STVDANSSAM LRAEEVQANL PSHFPSFVKY MLHSHVSRGF WLSFPRKFCD SYLPKHDDTV  120
VLVDENEEEF ATKYLIDKNG LSGGWRGFSI AHNLLEGDVL VFQLIQPCKF KVYIIRENNL  180
TEIDGAISLL NLDFHARPIK SDQSEDMKIC EAKEQKYLEP PVHQDVKQEE AILIPDSDQG  240
PASDQCGSDS DNGSEVLSIR FSESRLEFKD VKDFSGFNIL VDGLIIDAEI PAHIRTKYYY  300
LCCTQKSFLH EHLLGGLNCK LAAGMITETV NIADAIRASK ISIPRDFLET WDNTLKGFEC  360
LGMEVGFLRA RLGKLINMSC ESDSILLSKR VELAEAKEEM RNLEEKVLKV KQVIQKLDSE  420
IEALTLKDTS FELKFKALAA APW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475708.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1S4AGZ8	0.0	A0A1S4AGZ8_TOBAC; B3 domain-containing protein Os01g0234100-like
STRING	XP_009612763.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-39	B3 family protein