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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 491aa MW: 55379.5 Da PI: 6.4384 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 89 | 179 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++p +v+ +l +pkkf+ ++ ++k+ + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l++ +f +v XP_009612762.1 89 FVKYMLPTHVTGGFWLGFPKKFC-DYHLPKR-DDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLVHGDVLIFQLIQLCKF--KVY 175 8999*******************.6656664.55****************888888....************************998888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009612762.1 176 IIRE 179 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.22E-21 | 83 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-18 | 83 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-24 | 87 | 178 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 89 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-13 | 89 | 179 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-19 | 89 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 9.5E-10 | 370 | 473 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MAISAMYSSK KSPLLSSSKK KALEIKKKLL RKRALGPCNT YKGKNGDNKK VQIRPEKKVN 60 KPSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLPTHVTG GFWLGFPKKF CDYHLPKRDD 120 TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLVHGD VLIFQLIQLC KFKVYIIRES 180 TLAELDGAIS LLNLDFHAKP IKSEICEAKE QKYLEPPVLD THQDDKQEID GAISLLKLDF 240 RARPIISDQD EEMKICEAKE EKYLEPSVID IDQDDQNVEA MLLKNSDQGP ASDQCGNNSD 300 NSSEVLGIRF SESRLEFKDM KVFSGFNILI DSLIIDSEIP AHIRTKYYEL CCTQKSFLHD 360 HLLGGLNCKL AAGMITETVN IADAIRASNI STSRDYLETW NSTLKGFECL GMEVGFLRAR 420 LNKLVSLSSE SQQILESKRN ELAEAKEEMR NLETKLLKVK QVIKNLDSEI ELTTKDTSFE 480 IKYKALAAVP W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612762.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A1S4AG97 | 0.0 | A0A1S4AG97_TOBAC; B3 domain-containing protein Os01g0234100-like | ||||
STRING | XP_009612762.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3023 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-42 | B3 family protein |