PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 339aa MW: 38738.4 Da PI: 10.1378 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.9e-16 | 126 | 215 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k ++ps+v +l lpk+f++ h + ++t++l de+ ++++ + ++++ l++GW++F +++L gD ++F+l++ + l+v XP_009612758.1 126 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSHDTTVILVDEWDNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LKVY 212 889********************8884..345679***************888888....***********************997444..5888 PP EE- CS B3 96 vfr 98 ++r XP_009612758.1 213 IIR 215 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 118 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-22 | 120 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-21 | 124 | 215 | No hit | No description |
PROSITE profile | PS50863 | 11.434 | 126 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 126 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-17 | 126 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEDRNLISVK PVTKRWKEGQ QKVGHHKLKP TSYSSASTST QTHPSPKIKR VQLDRKNMVP 60 KKPRSVKSKA KRVKSNHPRK AESSKLKGTN KRTRINDLYD DVEAKFSVME RAERILSSLA 120 DEFPSFAKCM LPSNVAHGFW LHLPKSFCNM HLPSHDTTVI LVDEWDNEYK TSYLLERNGL 180 SAGWRGFSMS HRLLKGDLLI FRLIEPCKLK VYIIRVNGRD VVDAALCLMN FDALKKSTDL 240 DLAQKDNRKR KKAKRLVEPF YVDFSKPKEY IQNDSHSAVD LNVSPSVHRS ETNSEVLDSE 300 VPEGFIAGSD VINRLQSNEI CCSETSFLHD NPQKSISCR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 247 | 251 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-79 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-79 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612758.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
TrEMBL | A0A1S4DQM9 | 0.0 | A0A1S4DQM9_TOBAC; B3 domain-containing protein At5g42700-like isoform X1 | ||||
STRING | XP_009612758.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-38 | B3 family protein |