PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009612758.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 339aa MW: 38738.4 Da PI: 10.1378

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612758.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.7	6.9e-16	126	215	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k ++ps+v +l lpk+f++ h + ++t++l de+ ++++ + ++++ l++GW++F +++L gD ++F+l++ + l+v XP_009612758.1 126 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSHDTTVILVDEWDNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LKVY 212 889******************8884..345679***********888888....*********************997444..5888 PP EE- CS B3 96 vfr 98 ++r XP_009612758.1 213 IIR 215 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-18	118	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-22	120	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.13E-21	124	215	No hit	No description
PROSITE profile	PS50863	11.434	126	217	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-12	126	215	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-17	126	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEDRNLISVK PVTKRWKEGQ QKVGHHKLKP TSYSSASTST QTHPSPKIKR VQLDRKNMVP 60 KKPRSVKSKA KRVKSNHPRK AESSKLKGTN KRTRINDLYD DVEAKFSVME RAERILSSLA 120 DEFPSFAKCM LPSNVAHGFW LHLPKSFCNM HLPSHDTTVI LVDEWDNEYK TSYLLERNGL 180 SAGWRGFSMS HRLLKGDLLI FRLIEPCKLK VYIIRVNGRD VVDAALCLMN FDALKKSTDL 240 DLAQKDNRKR KKAKRLVEPF YVDFSKPKEY IQNDSHSAVD LNVSPSVHRS ETNSEVLDSE 300 VPEGFIAGSD VINRLQSNEI CCSETSFLHD NPQKSISCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	251	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-79	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-79	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612758.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBL	A0A1S4DQM9	0.0	A0A1S4DQM9_TOBAC; B3 domain-containing protein At5g42700-like isoform X1
STRING	XP_009612758.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-38	B3 family protein