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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 31022.1 Da PI: 6.1023 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.1 | 2.2e-16 | 42 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeekew..yfFskrdkkyatgkrknr.atksgyWkatg 87 GfrF+P+d+e + +L + v+g+++ + + ++vd+y k ePw++ + + + e+++ +f +k +k + ++ r +r + ++g Wk+ XP_009612742.1 42 EEGFRFRPKDSEGL-TFLLRFVAGQEMYDAGFiTTNVDVYgKQEPWEIYEhgvpCGDDEDSSSypHFITKLKK-K-SNARYHRaVGNKGSWKQDA 133 68**********99.7888999999966657636677*99456*****7335543333444442345444444.4.45788884677******** PP NAM 88 kdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 k k++++ +g k+ L + ++ ++ + +W+m+ey+l XP_009612742.1 134 KGKPMVN-----IGSKTNLSYKNKefYPEDQKDGHWLMKEYEL 171 *****99.....66666666653321244445679******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-15 | 31 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.966 | 41 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-11 | 43 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MENSLSCCGI GGSRDRGALF TLQEVAFLLR YSLLFIRHLE LEEGFRFRPK DSEGLTFLLR 60 FVAGQEMYDA GFITTNVDVY GKQEPWEIYE HGVPCGDDED SSSYPHFITK LKKKSNARYH 120 RAVGNKGSWK QDAKGKPMVN IGSKTNLSYK NKEFYPEDQK DGHWLMKEYE LSKVILHKFD 180 QDCRDYVLCA IKKLKHVNSS SETSTITTLN NVSDGTDEVT SSVDGLLATN NCKNYYNMCK 240 NLEHSEMMAF QESMVMNNSV VEPLQVVVVG PSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512401.1 | 1e-140 | PREDICTED: protein NTM1-like 9, partial | ||||
TrEMBL | A0A314KLA0 | 1e-140 | A0A314KLA0_NICAT; Uncharacterized protein | ||||
STRING | XP_009612742.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-10 | NAC domain containing protein 32 |