PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612623.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 251aa    MW: 27513.3 Da    PI: 7.6227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16126162135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  XP_009612623.1 126 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 162
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.9E-155394IPR010402CCT domain
PROSITE profilePS5101712.6895395IPR010402CCT domain
SMARTSM004015.5E-12120173IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11123173No hitNo description
CDDcd002022.43E-15125172No hitNo description
PROSITE profilePS501148.603125178IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13125167IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.8E-14126162IPR000679Zinc finger, GATA-type
PROSITE patternPS003440126153IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFTEIIMVSP YYMVQAVLLL LGECDIPTAV PTVEVPFDNT VEDFPKQVNL SRRFASLVRF  60
REKRKERCFD KKIRYSVRKE VAQRMHRKNG QFASLKANSG SSSCDSAKSS LEGDGTQHSE  120
TVPGKCHHCG VSENCTPAMR RGPDGPRTLC NACGLKWANK GTLRDLSKGA RKISVEPKEL  180
GTPDNPMKAF AEGSLDQCAD VEKNLFSAGS NLANEIPVGI ISPSCNLVEQ ETLVDIGNAS  240
KTEIDIPANF D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0413602e-50CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBankHG9755162e-50HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612623.10.0PREDICTED: GATA transcription factor 24-like isoform X2
RefseqXP_018629561.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL75e-52GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3Z6F80.0A0A1S3Z6F8_TOBAC; GATA transcription factor 24-like isoform X2
STRINGXP_009612622.11e-176(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-51ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]