PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27299.7 Da PI: 4.962 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 8e-09 | 86 | 131 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 ++ rE+ RRdr+N++f eL ++l + + +K +K++iL A + + XP_009612610.1 86 SKASREKLRRDRLNERFLELSSVLDPG---RPPKTEKVAILSDAQKMLI 131 5778**********************8...88**********9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.436 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.75E-7 | 85 | 138 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-12 | 86 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-6 | 86 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-11 | 87 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-7 | 88 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEIDSSGNPN WLFDYELITD ITSAASVAVA DFQSPATIDF SWPAQTIYAS SNLIAETDYT 60 FDDSEVSKEA SSRKRSRIEC CNSPRSKASR EKLRRDRLNE RFLELSSVLD PGRPPKTEKV 120 AILSDAQKML IELRAETQKL KESNEELQEK IKELKAEKNE LRDEKQSLKE EKENLEQQVK 180 NLSSKPGFLS HPSAMGAAFT AQGQVAGNKL MPFIGYPSVA MWQFMQPAVV DTSQDHVLRP 240 PVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240290 | 1e-120 | AC240290.1 Solanum tuberosum chromosome 7 clone RHPOTKEY032K01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612610.1 | 1e-180 | PREDICTED: transcription factor ILR3-like | ||||
Refseq | XP_016487645.1 | 1e-180 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 8e-83 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1S4BFH4 | 1e-179 | A0A1S4BFH4_TOBAC; transcription factor ILR3-like | ||||
STRING | XP_009612610.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-85 | bHLH family protein |