PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009612472.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 239aa MW: 28084.1 Da PI: 7.9589

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.5	5.9e-14	18	94	11	98
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k+g + +p f+ ++ + + + +++ + + +++W vk+ ++++ l++GW++F+++++L+ gD++vF ++g++ef v++f XP_009612472.1 18 FKHG-IKIPLGFL-KYlK-D-HDNIEHAILRRGSKKWLVKV--NGRR----LEEGWEKFAEDHDLQLGDMLVFGHEGNMEF--EVSIFH 94 4554.99999999.6733.3.35678899999*******..8888....***********************99999..888875 PP
2	B3	52.5	8.7e-17	137	222	5	94
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++ l++++l +pk+fa ++g+++++ +l+++de+ rsW++ + r +s +++++GW+e + + LkegD ++F+++ + e++++ XP_009612472.1 137 TVRPYCLQNDILNIPKQFAWANGLINKK-CDLIIRDERQRSWNLVV--RSYSTNVYISGGWNEIRDIHCLKEGDRIMFEVVAN-EKKPTW 222 5789999*************988654.59***********..*****************************9875.444554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-19	3	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.9E-19	4	98	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.914	7	96	IPR003340	B3 DNA binding domain
CDD	cd10017	3.24E-13	8	93	No hit	No description
SMART	SM01019	2.8E-13	10	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-10	19	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-15	132	219	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.138	133	230	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-16	133	226	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.7E-14	134	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-13	137	224	IPR003340	B3 DNA binding domain
CDD	cd10017	1.54E-10	148	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKVSPNKPHF LKPILPGFKH GIKIPLGFLK YLKDHDNIEH AILRRGSKKW LVKVNGRRLE 60 EGWEKFAEDH DLQLGDMLVF GHEGNMEFEV SIFHSNQCER EYEEEQKVHN VEETSKKFEF 120 KGIDTHKLFS QSRFVCTVRP YCLQNDILNI PKQFAWANGL INKKCDLIIR DERQRSWNLV 180 VRSYSTNVYI SGGWNEIRDI HCLKEGDRIM FEVVANEKKP TWKFHAKSGE DASIIQEVD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473039.1	1e-175	PREDICTED: B3 domain-containing protein REM8-like
TrEMBL	A0A1S4A8Y6	1e-174	A0A1S4A8Y6_TOBAC; B3 domain-containing protein REM8-like
STRING	XP_009612472.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	2e-37	B3 family protein