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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 431aa MW: 50053.8 Da PI: 7.8045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.5e-16 | 16 | 95 | 9 | 99 |
HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k+g l +pk f+ ++ +++++e+ t ++g++W vkl ++++ l++GW++F+++++L+ gD +vFk++g++ef v +f++ XP_009612446.1 16 PGFKQG-LKIPKGFL-KYlkDHDHNEH--AT-LRRDGKKWLVKL--NGRR----LEEGWEKFAEEHDLQLGDLLVFKHEGNMEF--EVIIFDS 95 455665.*******9.77564444444..44.347*********..8888....*************************99999..7777775 PP | |||||||
2 | B3 | 51.2 | 2.3e-16 | 144 | 225 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++s++l++g l++p +fa+++g+ + + +l+++de+ rsW++kl + ++++++ W +F an+Lk+gD ++F+++ + XP_009612446.1 144 CTVRSYYLTNGYLRVPSRFASKNGLTYK-KCDLIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFHAANDLKVGDRIMFEVVTNG 225 5678*******************88754.459***************..999999*************************87643 PP | |||||||
3 | B3 | 47.4 | 3.5e-15 | 328 | 414 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ l+ + l+lp +fa ++g+++++ +l+++de+ rsW++ l r + ++ +++GW++F + + LkegD ++F+++ +++++v k XP_009612446.1 328 TIRPYCLTYSYLILPTQFALTNGLINKK-CDLIIRDEWQRSWNLML--RPFGTSVCIRGGWRNFRDTHCLKEGDQIMFEVVT-DGTKPVWK 414 56788999999***********988654.59***************..*******************************876.56656655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 7 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-20 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.12E-18 | 8 | 94 | No hit | No description |
SMART | SM01019 | 7.3E-20 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-12 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 139 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 140 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.787 | 141 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-9 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 145 | 227 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.88E-13 | 147 | 220 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-16 | 321 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-18 | 323 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.533 | 324 | 418 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-13 | 325 | 419 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-13 | 328 | 414 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.86E-13 | 339 | 412 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MKIPPVKPHF FKPIQPGFKQ GLKIPKGFLK YLKDHDHNEH ATLRRDGKKW LVKLNGRRLE 60 EGWEKFAEEH DLQLGDLLVF KHEGNMEFEV IIFDSSHCDR EYAEYLQEEE DIVEGECKKF 120 ELKDGFPHAE AATHNPFGQS HFECTVRSYY LTNGYLRVPS RFASKNGLTY KKCDLIIRDE 180 RQRSWNLKLY TSCHHVYIGG RWAKFHAAND LKVGDRIMFE VVTNGERPIW KFHVKPNLSI 240 KSSSNAFPYA EAATHKPFGH SHLDSRHCNR EYVEYLQEEE EAASDAVEGT SKEFELKDEP 300 NPSVKSSSKA FPHVEAAIHK PFGHFVCTIR PYCLTYSYLI LPTQFALTNG LINKKCDLII 360 RDEWQRSWNL MLRPFGTSVC IRGGWRNFRD THCLKEGDQI MFEVVTDGTK PVWKFHGKIS 420 GENSRINQGV D |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612446.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like isoform X3 | ||||
TrEMBL | A0A1S4A8R5 | 0.0 | A0A1S4A8R5_TOBAC; B3 domain-containing protein REM5-like isoform X3 | ||||
STRING | XP_009612446.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 4e-42 | B3 family protein |