PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612433.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 356aa MW: 41105.1 Da PI: 8.8049 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.8e-15 | 10 | 94 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk + +k++ l +p f+ ++ g++ +++ + ++g++W vkl ++++ +++GW eF+++++L+ gD++vF+++g++ef v+ XP_009612433.1 10 FFKPM--LPGFKHD-LKIPIGFL-KYlkGYD---HIEHAVLKRDGKKWLVKL--TGRR----FEAGWAEFAEEHDLQLGDMLVFRHEGNMEF--DVS 91 77777..7788888.********.6655444...56789999**********..8887....9***********************999999..888 PP EE- CS B3 96 vfr 98 +f XP_009612433.1 92 IFG 94 886 PP | |||||||
2 | B3 | 50.2 | 4.7e-16 | 141 | 228 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ ++g l+lpk+fa ++g+ +++ l+++de+ rsW+++l + +++++++++ W eF an++k+g ++F+++++ ++++v k XP_009612433.1 141 CTVKPYCVTNGFLRLPKQFAWANGLANKK-CGLIIRDERQRSWDLRL--TTYGSQVYMGGRWGEFRAANDIKVGNYIMFEVVSN-GEQPVWK 228 567899999**************666433.46999************..9***9**************************8875.4445555 PP | |||||||
3 | B3 | 55.7 | 8.9e-18 | 250 | 339 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++ l++++l++p++fa ++g+++++ +l+++de+ rsW+++l r + ++ +++GW +F + n LkegD +vF+++ +++++ +++r XP_009612433.1 250 TIRPYCLSNDLLCIPRQFAHANGLINKK-CDLIIRDERQRSWSLRL--RSFGTGVCIKGGWHDFRDTNCLKEGDHIVFEVVT-NGEKPIWQFRR 339 678999****************988654.59***************..999999*************************876.56666766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-21 | 5 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.026 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.01E-16 | 8 | 93 | No hit | No description |
SMART | SM01019 | 1.2E-14 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-11 | 10 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-16 | 136 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-17 | 136 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.364 | 138 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-16 | 138 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-13 | 140 | 227 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.63E-11 | 144 | 217 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-20 | 239 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-21 | 244 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.84E-13 | 245 | 325 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 246 | 340 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-17 | 247 | 341 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-16 | 250 | 339 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MKIPPKKPHF FKPMLPGFKH DLKIPIGFLK YLKGYDHIEH AVLKRDGKKW LVKLTGRRFE 60 AGWAEFAEEH DLQLGDMLVF RHEGNMEFDV SIFGSNHCER EYAEYLEEGE VHTVEETSKN 120 FEFKDAAAAL HNPFGQSYFI CTVKPYCVTN GFLRLPKQFA WANGLANKKC GLIIRDERQR 180 SWDLRLTTYG SQVYMGGRWG EFRAANDIKV GNYIMFEVVS NGEQPVWKFH GKPNPSINSS 240 SKAFPHFVCT IRPYCLSNDL LCIPRQFAHA NGLINKKCDL IIRDERQRSW SLRLRSFGTG 300 VCIKGGWHDF RDTNCLKEGD HIVFEVVTNG EKPIWQFRRN ISGENASISF KGLTEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612433.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A1S4C180 | 0.0 | A0A1S4C180_TOBAC; B3 domain-containing protein REM10-like isoform X1 | ||||
STRING | XP_009612433.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-42 | B3 family protein |