PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612393.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 411aa MW: 45165.5 Da PI: 7.5329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	339	384	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L +l P+ +k + a++L +Av+YIk+Lq XP_009612393.1 339 SIAERMRRTRISQRMKKLHDLFPNM----DKQTNTADMLDLAVDYIKDLQ 384 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.948	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-15	336	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.50E-12	337	388	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-14	338	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	339	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-11	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MFSSTEPISR EMDKFNSFLF SSGGGSSSNF KNGGELQGME TEFLRNKEIM CSDYFQQQSS 60 QFHQQSNNNG GGLTRYRSAP SSFFAGILDG DGNNSGENFI THDGSSSSDS ESMFTALLNN 120 NDNNNVNNNN NNNNNVTVSG TRDLNDQISK NQLQFGSSSS MKQEIGEEIK FASSAMGSYG 180 VGVQMQSGVR LSNGNGGGSN NLIRQSSSPA GFFNGFDITR EVGNYRASSG ANMSFSSAQS 240 STSNFMPSIA EHESWNDSIF HSLKRNRDGD LKVFSNDFNG MTSQNAESRN FTTSGLTHHI 300 SLPKTSSEMA AIEKYLQFQQ DSVPCKIRAK RGCATHPRSI AERMRRTRIS QRMKKLHDLF 360 PNMDKQTNTA DMLDLAVDYI KDLQKQVQTL TDKKATCSCP SKQLQCSNGT T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MFSSTEPISR EMDKFNSFLF SSGGGSSSNF KNGGELQGME TEFLRNKEIM CSDYFQQQSS  60
QFHQQSNNNG GGLTRYRSAP SSFFAGILDG DGNNSGENFI THDGSSSSDS ESMFTALLNN  120
NDNNNVNNNN NNNNNVTVSG TRDLNDQISK NQLQFGSSSS MKQEIGEEIK FASSAMGSYG  180
VGVQMQSGVR LSNGNGGGSN NLIRQSSSPA GFFNGFDITR EVGNYRASSG ANMSFSSAQS  240
STSNFMPSIA EHESWNDSIF HSLKRNRDGD LKVFSNDFNG MTSQNAESRN FTTSGLTHHI  300
SLPKTSSEMA AIEKYLQFQQ DSVPCKIRAK RGCATHPRSI AERMRRTRIS QRMKKLHDLF  360
PNMDKQTNTA DMLDLAVDYI KDLQKQVQTL TDKKATCSCP SKQLQCSNGT T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF327439	1e-76	JF327439.1 Nicotiana attenuata clone NA541 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612393.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A1S4CNI2	0.0	A0A1S4CNI2_TOBAC; transcription factor bHLH130-like
STRING	XP_009612393.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	6e-58	bHLH family protein