PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612109.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 386aa    MW: 41146.2 Da    PI: 9.0099
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.61.8e-4385160176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegCeadls++k y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_009612109.1  85 RCQVEGCEADLSDVKAYYSRHKVCATHSKSPVVIVAGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 160
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-3479147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.20683160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-4084164IPR004333Transcription factor, SBP-box
PfamPF031107.9E-3386159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNGLSKSEME LLASASSSTS TTSTSPDSPP NTLKFGQKIY FEHVGPHHPK SATGSSSSPV  60
TGTPAPTTSK KGRGGGVVQG RQPSRCQVEG CEADLSDVKA YYSRHKVCAT HSKSPVVIVA  120
GLEQRFCQQC SRFHRLPEFD QGKRSCRRRL AGHNERRRKP PPGSLLSNRY GSLSSSIFEN  180
NGRSGSFLVD FTAYPNLTGG AWPNTRSSER GWDNQSTASG KLLQSHWLNS SENPTSDLVL  240
QGSVARGANY SGPGIIPSGN CFSGVSDSSG ALSLLSNESW GSRNQSSSLG VNDLVNTDGG  300
HTVQPSGSHA APVNHYSGPQ WGFKGNEASS SSHAIPPDLG LGHISQLAVN QYSAELGMAQ  360
HSGRQYMELE HSKGYDSSVQ NVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31861591184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732990.0LC073299.1 Nicotiana tabacum NtabSPL9b mRNA for squamosa promoter binding protein NtabSPL9b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312917.10.0squamosa promoter-binding-like protein 9
RefseqXP_009612109.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A125SZN80.0A0A125SZN8_TOBAC; Squamosa promoter binding protein NtabSPL9b
STRINGXP_009612109.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-59squamosa promoter binding protein-like 9