PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 557aa MW: 60574 Da PI: 8.6926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.7 | 1.6e-16 | 260 | 309 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYI+ Lq XP_009611734.1 260 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 309 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-23 | 255 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-18 | 256 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.272 | 258 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-14 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.39E-15 | 260 | 313 | No hit | No description |
SMART | SM00353 | 8.4E-13 | 264 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PIPPQGGFLK THDFLQPLEQ AEKALRKDET 60 KVEVVAVEKP QAPVGPPSVE HILPGGIGTY SISYLHQRVP KPEASLFAVA QASSTDRNDE 120 NSNCSSYTGG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE AGLNTGGGQP TTSLEWQSQS 180 SSNHKHNTTA ISSLSSARQS SPLKTQSFVH MITSAKNAQD DDDDDDEDFV IKKEPQSHPR 240 GNLSVKVDGE GNDKKPNTPR SKHSATEQRR RSKINDRFQM LRGIIPNSDQ KRDKASFLLE 300 VIEYIHFLQE KVHKYEESYQ GWENEPLKLP LSKCHRTTGG VSNHPQGTIN TSGAAPTYAG 360 KFDENIMGIS STNPFNGQKV EPNISTASLK ESSQRPGLTN KATTTSMHPN TFSFCGASST 420 AALYSSKLTA DTAKLESKSH PQFSVSRSHM TDYAIPNANS KGQDLSIERG TISISSAYSQ 480 GLLNTLTLAL QNSGVDLSQA NISVQIDLGK RANGILHSSA STVKGDDVST NKQPIPKSIG 540 TSAREESDRA FKRLKTS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013786 | 0.0 | BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611733.1 | 0.0 | PREDICTED: transcription factor BIM1 isoform X4 | ||||
TrEMBL | A0A1S4BIQ2 | 0.0 | A0A1S4BIQ2_TOBAC; transcription factor BIM1-like isoform X1 | ||||
STRING | XP_009611733.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-109 | bHLH family protein |