PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611733.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 558aa    MW: 60645.1 Da    PI: 8.6926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16261310255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  XP_009611733.1 261 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 310
                     889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-23256327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-18257327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-15261314No hitNo description
PfamPF000103.8E-14261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PIPPQAGGFL KTHDFLQPLE QAEKALRKDE  60
TKVEVVAVEK PQAPVGPPSV EHILPGGIGT YSISYLHQRV PKPEASLFAV AQASSTDRND  120
ENSNCSSYTG GSGFTLWDES AVKKGKTGKE NSGGDRHVLR EAGLNTGGGQ PTTSLEWQSQ  180
SSSNHKHNTT AISSLSSARQ SSPLKTQSFV HMITSAKNAQ DDDDDDDEDF VIKKEPQSHP  240
RGNLSVKVDG EGNDKKPNTP RSKHSATEQR RRSKINDRFQ MLRGIIPNSD QKRDKASFLL  300
EVIEYIHFLQ EKVHKYEESY QGWENEPLKL PLSKCHRTTG GVSNHPQGTI NTSGAAPTYA  360
GKFDENIMGI SSTNPFNGQK VEPNISTASL KESSQRPGLT NKATTTSMHP NTFSFCGASS  420
TAALYSSKLT ADTAKLESKS HPQFSVSRSH MTDYAIPNAN SKGQDLSIER GTISISSAYS  480
QGLLNTLTLA LQNSGVDLSQ ANISVQIDLG KRANGILHSS ASTVKGDDVS TNKQPIPKSI  540
GTSAREESDR AFKRLKTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611733.10.0PREDICTED: transcription factor BIM1 isoform X4
TrEMBLA0A1S4BIQ20.0A0A1S4BIQ2_TOBAC; transcription factor BIM1-like isoform X1
STRINGXP_009611733.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-108bHLH family protein