PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 558aa MW: 60645.1 Da PI: 8.6926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.7 | 1.6e-16 | 261 | 310 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYI+ Lq XP_009611733.1 261 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 310 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-23 | 256 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-18 | 257 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.272 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-15 | 261 | 314 | No hit | No description |
Pfam | PF00010 | 3.8E-14 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-13 | 265 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PIPPQAGGFL KTHDFLQPLE QAEKALRKDE 60 TKVEVVAVEK PQAPVGPPSV EHILPGGIGT YSISYLHQRV PKPEASLFAV AQASSTDRND 120 ENSNCSSYTG GSGFTLWDES AVKKGKTGKE NSGGDRHVLR EAGLNTGGGQ PTTSLEWQSQ 180 SSSNHKHNTT AISSLSSARQ SSPLKTQSFV HMITSAKNAQ DDDDDDDEDF VIKKEPQSHP 240 RGNLSVKVDG EGNDKKPNTP RSKHSATEQR RRSKINDRFQ MLRGIIPNSD QKRDKASFLL 300 EVIEYIHFLQ EKVHKYEESY QGWENEPLKL PLSKCHRTTG GVSNHPQGTI NTSGAAPTYA 360 GKFDENIMGI SSTNPFNGQK VEPNISTASL KESSQRPGLT NKATTTSMHP NTFSFCGASS 420 TAALYSSKLT ADTAKLESKS HPQFSVSRSH MTDYAIPNAN SKGQDLSIER GTISISSAYS 480 QGLLNTLTLA LQNSGVDLSQ ANISVQIDLG KRANGILHSS ASTVKGDDVS TNKQPIPKSI 540 GTSAREESDR AFKRLKTS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013786 | 0.0 | BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611733.1 | 0.0 | PREDICTED: transcription factor BIM1 isoform X4 | ||||
TrEMBL | A0A1S4BIQ2 | 0.0 | A0A1S4BIQ2_TOBAC; transcription factor BIM1-like isoform X1 | ||||
STRING | XP_009611733.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-108 | bHLH family protein |