PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611319.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 352aa    MW: 40004.1 Da    PI: 7.7758
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++
  XP_009611319.1  25 FLTKTYQLVDDPTTDHVVSWGEDDSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009611319.1 111 IHRRKTA 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.01E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALMLDSCEG ILLSLDSQKS VPAPFLTKTY QLVDDPTTDH VVSWGEDDST FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ  120
ISMNHHHHSL NHQMSMSGPN FFPNYPNNNR LSISPPDSDE LLQQQQPNIN WCDSPTTLTS  180
SNNNNTTVTA LSEDNERLRR SNNMLMSELA HMRKLYNDII YFVQNHVKPV APSSSYNPSS  240
LLPASATPIV QKHMINPRQG MINNGMNIMM SNFNNVNSPS KTSQSSSVTI LEEAAADMGI  300
NRSTKLFGVP LMSKKRVHPE YSSSFNMGET NKARLVLEKD DLGLNLMPPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222111717123Heat shock factor protein 1
5d5u_B2e-222111626131Heat shock factor protein 1
5d5v_B2e-222111626131Heat shock factor protein 1
5d5v_D2e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754438e-75HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611319.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-118HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S3Y8C50.0A0A1S3Y8C5_TOBAC; heat stress transcription factor B-4-like
STRINGXP_009611319.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-99heat shock transcription factor B4