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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28135.8 Da PI: 6.9284 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN + +Lr l+P K++Ka+ L k++ +Ik+L XP_009611307.1 61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISHIKDL 107 58*************************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.624 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-4 | 61 | 108 | No hit | No description |
Pfam | PF00010 | 2.7E-11 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-14 | 62 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-14 | 62 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.93E-6 | 146 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEFFNSFNGF YEDYGFQGIM ANGSTPSSSL ILDNERGELV KAMVRQEQKG VNPEKALIAL 60 KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISHIKDLRVN AAEATKGVLV 120 PTDIDEVCVE QQAEGSGGAT YSVKASVCCE YKHELISDLR QALDTLPLKT LRAEIATLGN 180 RMVSVFVITE GNEGNIEDNE RCQLLVTSVR QALRSVLDKF YASEEFSSRS TLSSKRRRVS 240 LLDSSSSSSL GDFW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | ERRRRE |
2 | 234 | 238 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611307.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_016491701.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S4BS57 | 0.0 | A0A1S4BS57_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009611307.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11989 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-31 | bHLH family protein |