PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611307.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 254aa    MW: 28135.8 Da    PI: 6.9284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1361107354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  XP_009611307.1  61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISHIKDL 107
                     58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.62458107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-461108No hitNo description
PfamPF000102.7E-1161107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1462110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1462108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.93E-6146217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFFNSFNGF YEDYGFQGIM ANGSTPSSSL ILDNERGELV KAMVRQEQKG VNPEKALIAL  60
KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISHIKDLRVN AAEATKGVLV  120
PTDIDEVCVE QQAEGSGGAT YSVKASVCCE YKHELISDLR QALDTLPLKT LRAEIATLGN  180
RMVSVFVITE GNEGNIEDNE RCQLLVTSVR QALRSVLDKF YASEEFSSRS TLSSKRRRVS  240
LLDSSSSSSL GDFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
2234238KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611307.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_016491701.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4BS570.0A0A1S4BS57_TOBAC; transcription factor bHLH30-like
STRINGXP_009611307.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-31bHLH family protein