PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 736aa MW: 83134 Da PI: 6.4703

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.7	4e-120	364	733	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L+ cA+av+++d + a+++L+++++++s+ gd mqRla+y++++L+ar+a+s++++y al + +ts +++l+a++lf ++P+ k+s++ XP_009611175.1 364 RTILTLCAQAVAADDRRTANEFLKQIRQNSSSMGDGMQRLAHYVANGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLAACPFRKLSNF 455 67899********************************************************999998...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +ak++e++ XP_009611175.1 456 FSNKTIMNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLANYAESFNVPFEFKA-IAKKWETI 549 ****************************************************9*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+l+Vn+ ++ +llde+v +s+rd vL+l+++l+P+v++ + +n++ F +rf eal +ys++fd+lea++pre +er+ XP_009611175.1 550 KVEDLEIRKDEVLVVNCLYRFRNLLDETVVANSPRDIVLNLIRTLKPDVFIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIHERML 644 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ ++gre++nvvace aer+er et+++W+ r +aGF+++pl+e+++ ak ++ +++d + ++ + ++l++gWk+r ++++S W+ XP_009611175.1 645 IEKIIFGREVMNVVACEAAERIERPETYKQWQVRNIRAGFRQLPLNEEIMRMAKERVKAYHKD-FVIDVDGHWLLQGWKGRIIYALSTWK 733 *********************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.393	337	714	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-117	364	733	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MVMDKNYKGL YEATSAIQIK DEDLSFFPDL NLINNLRVRD HNLVQRNQPD VLVPSAVDNS 60 HEDYDFSDVV LKYISQMLME ENIEEKACMF QESAALQAAE RSFYEVIGEK YPPSSNREMP 120 NLREIEGRYP VDCSSSNYYS CVSDVSDGLL CPNWNPDIGG DSDSSHAQHF PVDGAGASTS 180 QSSHSSPSSS GTVTDAHLDS PVNSIQIPDI FSDSESIMQF KKGVEEASKF LPTGNSLLLD 240 VRYNVVGKED NEYGKNAVVK VENWGKHQSP EGSRGKKNVH HDDVDAMEER SNKQSAVFSE 300 STVRSEMFDR VLLCSGGKNE SALRESWQTV SSKNAPEDGL PKGSNGRKSR GKRQGSKRDT 360 VDLRTILTLC AQAVAADDRR TANEFLKQIR QNSSSMGDGM QRLAHYVANG LEARMAGSGT 420 QIYTALISMP TSAADVLKAY QLFLAACPFR KLSNFFSNKT IMNVAERAKT VHIIDFGIMY 480 GFQWPCFIQR LSSRPGGPPK LRITGIDFPN PGFRPAERVE ETGKRLANYA ESFNVPFEFK 540 AIAKKWETIK VEDLEIRKDE VLVVNCLYRF RNLLDETVVA NSPRDIVLNL IRTLKPDVFI 600 QGIVNGAYNA PFFITRFREA LFHYSSVFDM LEANIPREIH ERMLIEKIIF GREVMNVVAC 660 EAAERIERPE TYKQWQVRNI RAGFRQLPLN EEIMRMAKER VKAYHKDFVI DVDGHWLLQG 720 WKGRIIYALS TWKAAY

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MVMDKNYKGL YEATSAIQIK DEDLSFFPDL NLINNLRVRD HNLVQRNQPD VLVPSAVDNS  60
HEDYDFSDVV LKYISQMLME ENIEEKACMF QESAALQAAE RSFYEVIGEK YPPSSNREMP  120
NLREIEGRYP VDCSSSNYYS CVSDVSDGLL CPNWNPDIGG DSDSSHAQHF PVDGAGASTS  180
QSSHSSPSSS GTVTDAHLDS PVNSIQIPDI FSDSESIMQF KKGVEEASKF LPTGNSLLLD  240
VRYNVVGKED NEYGKNAVVK VENWGKHQSP EGSRGKKNVH HDDVDAMEER SNKQSAVFSE  300
STVRSEMFDR VLLCSGGKNE SALRESWQTV SSKNAPEDGL PKGSNGRKSR GKRQGSKRDT  360
VDLRTILTLC AQAVAADDRR TANEFLKQIR QNSSSMGDGM QRLAHYVANG LEARMAGSGT  420
QIYTALISMP TSAADVLKAY QLFLAACPFR KLSNFFSNKT IMNVAERAKT VHIIDFGIMY  480
GFQWPCFIQR LSSRPGGPPK LRITGIDFPN PGFRPAERVE ETGKRLANYA ESFNVPFEFK  540
AIAKKWETIK VEDLEIRKDE VLVVNCLYRF RNLLDETVVA NSPRDIVLNL IRTLKPDVFI  600
QGIVNGAYNA PFFITRFREA LFHYSSVFDM LEANIPREIH ERMLIEKIIF GREVMNVVAC  660
EAAERIERPE TYKQWQVRNI RAGFRQLPLN EEIMRMAKER VKAYHKDFVI DVDGHWLLQG  720
WKGRIIYALS TWKAAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	347	732	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611176.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4D655	0.0	A0A1S4D655_TOBAC; scarecrow-like protein 14
STRING	XP_009611175.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]