PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610983.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 669aa    MW: 73751.5 Da    PI: 6.4398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-15253312155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_009610983.1 253 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 312
                     57*******************666664478446*************************98 PP
2AP246.87.6e-15355406155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009610983.1 355 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-17253322IPR016177DNA-binding domain
CDDcd000187.65E-23253322No hitNo description
PfamPF008475.5E-12253312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-16254321IPR001471AP2/ERF domain
SMARTSM003801.2E-29254326IPR001471AP2/ERF domain
PROSITE profilePS5103219.23254320IPR001471AP2/ERF domain
PRINTSPR003676.8E-6255266IPR001471AP2/ERF domain
CDDcd000183.91E-25355416No hitNo description
PfamPF008479.4E-10355406IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17355415IPR016177DNA-binding domain
PROSITE profilePS5103219.177356414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18356414IPR001471AP2/ERF domain
SMARTSM003802.7E-33356420IPR001471AP2/ERF domain
PRINTSPR003676.8E-6396416IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MASSMNNWLG FSLSPHEELT SQTSQEISGS VDVSGECFDL TSHDSTLPSL NVVPHIPFGI  60
FEAFNRNHQS QDWSSHDPNY KTTSEMSMLM GISCNTSQHL ENQEPPKLEN FLGIGEVQSN  120
NNNNNINGDY SIYSSVTSTT NNIGSNTNNN TIGLSMIKNW LRNNPNTSTP SLQDDKKEGE  180
GVVVGGGNNA QSLSLSMSTG GGGGGGGENS CSSENNKQQE NANGTNGSID VQNNGAIEAV  240
PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQVYL GGYDKEEKAA  300
RAYDLAALKY WGPTTTTNFP ISNYEKELDE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV  360
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFEINRYDV  420
KSILESSTLP IGGAAKRLKD AEQADQIALD YQRVSQENIG SHLTNGTISS YGANANHIWS  480
NIAFQQAQAQ PLNMHYPYSQ QQQQQQRLWC KQEVQDSDHL SSTQNFQDFH QLQHGNIAHN  540
FLQPTSALHN LMGLDTSSTS MEHNNVTYQG VGYASSPSGG FALPQLSQGN GYGENEVKQQ  600
LGNENIFGYY HSQQSTSNGL VKVAGLYDHQ ESVNCNNWMS TAVPALASRN NTVAICHGGA  660
PTFTVWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610983.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3YK470.0A0A1S3YK47_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009610983.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-142AP2 family protein