PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009610673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35008.3 Da PI: 8.2952 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.6e-10 | 38 | 87 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL + l ++ +K++Ka+iL +v+ +k+L XP_009610673.1 38 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQMLKDL 87 5677889********************997....79****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-13 | 37 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.44 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-12 | 37 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.19E-7 | 38 | 92 | No hit | No description |
Pfam | PF00010 | 4.6E-8 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-7 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVSKGVVVLR SVGSGILQCK LCTKQQPEAE LKDSLAARKV QKADREKLRR DRLNEQFMEL 60 GKTLDPDRPK NDKASILSDT VQMLKDLTAQ VSRLKSEYAA LTDESRELTQ EKNDLREEKA 120 SLKSDIESLN AQYQQRVRTM YPWAGMDHSM VMHPPSYSYP MPVPVPAGPV PMHPSLQPYP 180 FFSNQNPAVV PNPCSSFLQY MTPNTLIEQQ SAQYMSPIIQ PGSMTRQDSR NKSSDQGESR 240 IDKSEDSNEV ATDLELKTPG SASDQDLSSG QRKSKRMSKK DNSLTDGSSS SRCSSSHSVQ 300 AISSNSVVRG TKTDD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240854 | 1e-178 | AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence. | |||
GenBank | AC240859 | 1e-178 | AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-178 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610672.1 | 0.0 | PREDICTED: transcription factor bHLH121-like | ||||
Refseq | XP_016444448.1 | 0.0 | PREDICTED: transcription factor bHLH121-like | ||||
Swissprot | Q9LT23 | 8e-93 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1S3XWY3 | 0.0 | A0A1S3XWY3_TOBAC; transcription factor bHLH121-like | ||||
STRING | XP_009610672.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 6e-87 | bHLH family protein |
Publications ? help Back to Top | |||
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