PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610673.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 315aa    MW: 35008.3 Da    PI: 8.2952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-103887154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  XP_009610673.1 38 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQMLKDL 87
                    5677889********************997....79****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1337103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.443787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1237110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-73892No hitNo description
PfamPF000104.6E-83887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-74393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVSKGVVVLR SVGSGILQCK LCTKQQPEAE LKDSLAARKV QKADREKLRR DRLNEQFMEL  60
GKTLDPDRPK NDKASILSDT VQMLKDLTAQ VSRLKSEYAA LTDESRELTQ EKNDLREEKA  120
SLKSDIESLN AQYQQRVRTM YPWAGMDHSM VMHPPSYSYP MPVPVPAGPV PMHPSLQPYP  180
FFSNQNPAVV PNPCSSFLQY MTPNTLIEQQ SAQYMSPIIQ PGSMTRQDSR NKSSDQGESR  240
IDKSEDSNEV ATDLELKTPG SASDQDLSSG QRKSKRMSKK DNSLTDGSSS SRCSSSHSVQ  300
AISSNSVVRG TKTDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408541e-178AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408591e-178AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9755131e-178HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610672.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_016444448.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT238e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3XWY30.0A0A1S3XWY3_TOBAC; transcription factor bHLH121-like
STRINGXP_009610672.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-87bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]