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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009610524.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
C2H2 |
| Protein Properties |
Length: 399aa MW: 44667.8 Da PI: 8.3987 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009610524.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.7 | 9.8e-06 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++C++ F r nL+ H r+H
XP_009610524.1 60 YICEICNQGFQRDQNLQMHRRRH 82
89********************9 PP
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| 2 | zf-C2H2 | 17.5 | 1.2e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k + +s++k H++t+
XP_009610524.1 137 WVCEKCSKAYAVQSDYKAHLKTC 159
58*******************98 PP
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| 3 | zf-C2H2 | 11.1 | 0.0012 | 167 | 185 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr +++ H+ t+
XP_009610524.1 167 DCGRVFSRVESFIEHQDTC 185
9***************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009630 | Biological Process | gravitropism |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
| GO:0048444 | Biological Process | floral organ morphogenesis |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:2000904 | Biological Process | regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043621 | Molecular Function | protein self-association |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MLDNSSSSPV GPSSSSEAFN NSAENSGVSN RRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60
ICEICNQGFQ RDQNLQMHRR RHKVPWKLVK RETPQVKKRV FVCPEPTCLH HDPCHALGDL 120
VGIKKHFRRK HSNNKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180
HQDTCTVRSS SSTRPDLQPL QAGCSSRTAS STSPSSDTNF SSIAPNLPRL TIMPLPNNSD 240
QHNEFPSSNN NDQQHNLELR LLPSSIACPS RTSDHENQAP HLKLSIGSST RDSILVSKDH 300
KELNLAMAEK AYAEEARRQA KRQIEFAELE FANAKRIRQQ AQAEIERAQN LKEEATKRIS 360
SSILEITCHA CKNKFQETDE SSPAMSYMSS ATTEAEGEH
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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