PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009610476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18518.3 Da PI: 8.6807 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.6 | 8.8e-10 | 14 | 50 | 6 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +s+++ + kR + + K Ae LS+LCd+ev +ii+ s XP_009610476.1 14 DSKKKAILDKRIASLCKRAEKLSILCDIEVGLIIYNS 50 566667788*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.928 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0086 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-12 | 13 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-8 | 14 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MTRKGLRNIK NLSDSKKKAI LDKRIASLCK RAEKLSILCD IEVGLIIYNS PVETNPFVWP 60 SLTKATNIVT NYLRFTEVQR EKKLVRHDVY LQEKVNDMEK NVRSKIEQMA EEMEMETLFN 120 QLVKGKNINE LDVRQIKGLG ESEGKANDDG EKNDGHPKDL D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248919.1 | 2e-42 | PREDICTED: agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A1J6IMU5 | 4e-41 | A0A1J6IMU5_NICAT; Agamous-like mads-box protein agl36 | ||||
STRING | XP_009610476.1 | 1e-114 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-20 | M-type_MADS family protein |