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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009610417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25628.7 Da PI: 10.3886 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.3 | 6.7e-28 | 20 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdk 90 lp GfrF+Ptdeel+ +yL +k+ + +l++ +i+e+ di+++ P+dLp + +++ yfFsk++ ++ k +r ++ sgyWka g+ + XP_009610417.1 20 LPIGFRFRPTDEELLAHYLSRKIFSMPLPA-LIIPEIlDIFDSFPSDLPGDL---REKRYFFSKANGDINS-KGCSRLISgkdcSGYWKAVGQGQ 109 699**************************9.5688888***********543...4578****99987754.4444532224569********** PP NAM 91 evlsk.........kgel....vglkktLvfykgrapkgektdWvmheyrl 128 +++ + + g+kk L fy+++++ t+W+mh+y+l XP_009610417.1 110 LIVVPisgsaisdqQ--QqrllLGMKKALRFYQATRSGYLTTRWIMHQYSL 158 **9998888887541..14667**********99999999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-34 | 15 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.612 | 20 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-19 | 21 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEEQKDGAKR GGGTVRSLNL PIGFRFRPTD EELLAHYLSR KIFSMPLPAL IIPEILDIFD 60 SFPSDLPGDL REKRYFFSKA NGDINSKGCS RLISGKDCSG YWKAVGQGQL IVVPISGSAI 120 SDQQQQRLLL GMKKALRFYQ ATRSGYLTTR WIMHQYSLVT ISPSDQNVNM MQVGDWSIFR 180 IYQKKLLISK NVRTKSNGFA EQCKIKTNTR KRPFNEVLKD KEVLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-20 | 7 | 185 | 2 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610417.1 | 1e-167 | PREDICTED: NAC domain-containing protein 83-like isoform X2 | ||||
TrEMBL | A0A1S4AAV3 | 1e-164 | A0A1S4AAV3_TOBAC; NAC domain-containing protein 83-like isoform X2 | ||||
STRING | XP_009610416.1 | 1e-165 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 7e-32 | NAC domain containing protein 41 |