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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009610157.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 327aa MW: 36592.5 Da PI: 10.1206 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009610157.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 377.7 | 2e-115 | 1 | 327 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd+g+r+ r+k+ + + ++ +s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e
XP_009610157.1 1 MDDSGHRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRE 90
999*998888888732222232234444.....************************************************************99 PP
GAGA_bind 89 nslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
s++ + +v+++ ++ +++ + + + p++++++++ r+++ +e++p++ a+e ++ +++k rak+pk+ + +kk+ k kkvk+e
XP_009610157.1 91 SSISGGGQIARGVVKHMHHPQQHVHvH-HqPHMGEPTYNPRDMHVNESMPVSPVAPEPTKPRRNK---RAKEPKAMTGSKKTPKA---SKKVKRE 178
997766555556665555544443324.359*******************998777666655555...55555554444333322...2333333 PP
GAGA_bind 182 sader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
++d + sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP++
XP_009610157.1 179 TEDLNqttfgksqewkgaqemgdasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAV 273
33311234566678999****************************************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
XP_009610157.1 274 PNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNHWAKHGTNRYITIK 327
*****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MDDSGHRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60
AILQRDSAIA ERNNAIMERD NAIATLQYRE SSISGGGQIA RGVVKHMHHP QQHVHVHHQP 120
HMGEPTYNPR DMHVNESMPV SPVAPEPTKP RRNKRAKEPK AMTGSKKTPK ASKKVKRETE 180
DLNQTTFGKS QEWKGAQEMG DASDDLNRQL AVSKPDWKDQ DLGLNQVAFD ETTMPVPVCS 240
CTGVLRPCYK WGNGGWQSSC CTTNLSMYPL PAVPNKRHAR IGGRKMSGSA FTKLLSRLAA 300
EGHDLSNPVD LKNHWAKHGT NRYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ808724 | 0.0 | KJ808724.1 Nicotiana tabacum GAGA-binding transcriptional activator mRNA, complete cds. |
