PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609888.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 368aa    MW: 42119 Da    PI: 4.7196
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.9e-15134218286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++e+  L+ea  ++  r +r++l+   W+ev++k+ +  ++er+ +qC+++++ l+k+ykk+k    ++ +++s +++yf++++
  XP_009609888.1 134 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAENGCNTS-KWVYFKKMD 218
                     *************************************555689************************999988887.9*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.365132191IPR017877Myb-like domain
PfamPF138371.0E-20133220No hitNo description
Gene3DG3DSA:1.10.10.603.9E-5133199IPR009057Homeodomain-like
CDDcd001670.00947134186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDDNEDNGRY PPSPYGMNQG YGSSNRQKLP VRDTSYSRHV DDQYVEEADN DEDVDDEEEE  60
DDDDDENGVQ RIGKDVFEDD DDDDYGDSQR HQKKRKLKSL LSSYEFAPRV PPPSTAAPTA  120
PKPSFGGRNP LSDWSEHETF ILLEAWGDRF VRHGRKSLRS DEWQEVAEKV SQGSKLERTD  180
TQCRNRLDTL KKKYKKEKMK FAENGCNTSK WVYFKKMDML LTSTPQLAGV SCGVDSGEYV  240
FMSSKVSLNR ANGLDEMRDS PNNSGSADGD NDDSEDLPPK RSRNGQSRGN GASFKLIADS  300
IHKFSEIYVK IENSKRQQML ELEKMRMDFH RDLEMQKRQI VERAHAEIAR IRQGRDEEND  360
ISAENVSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609888.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1S4B3K30.0A0A1S4B3K3_TOBAC; trihelix transcription factor ASIL1-like
STRINGXP_009609888.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.18e-67Trihelix family protein