PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609389.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 334aa    MW: 35800.3 Da    PI: 6.2884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15246281134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  XP_009609389.1 246 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 281
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.818110145IPR010399Tify domain
SMARTSM009793.6E-12110145IPR010399Tify domain
PfamPF062001.0E-12113144IPR010399Tify domain
PfamPF062034.2E-16177219IPR010402CCT domain
PROSITE profilePS5101713.205177219IPR010402CCT domain
PROSITE profilePS501148.814240297IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-11240294IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-11241291No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14244287IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.13E-14245295No hitNo description
PfamPF003201.2E-13246281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440246273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAETNRRANM YGRETINAAL HHQQTQIDDD DDDDVAAGTE GGGGGADGGR ESMDNNPNIR  60
YDHHHQSHSH SHALHNGGES MEMNGVEGVS HNALYCPPNT EIVQTAVAAG SGASDQLTLS  120
FQGEVYVFDA VSPEKVQAVL LLLGGYEVPA GIPTVSVAAQ SQRASADFPG RLNQPQRAAS  180
LNRFREKRKE RCFDKKIRYT VRKEVAMRMQ RKKGQFTSSK SISDEAGSSS ADWNEGSGQE  240
EQETSCRHCG ISSKSTPMMR RGPAGPRSLC NACGLKWANK GILRDLSKVP TPGAQDQTAK  300
SGEQSNGEPN GSDAMAAAAI ITPDGDNTMV TAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL75e-82GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D60.0A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-83ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]