|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_009609340.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
MIKC_MADS |
Protein Properties |
Length: 239aa MW: 27468.4 Da PI: 10.0185 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009609340.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 84.1 | 8.6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n + rqvtfskRrng+lKKA+ELS+LCdaev +iifsst kly+++s
XP_009609340.1 10 RIDNITSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTAKLYDFAS 59
8***********************************************86 PP
|
2 | K-box | 78.7 | 1.5e-26 | 83 | 170 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
++ + +q e+a+L+++++ Lq+ +R+llGe+L++Ls+k+L Le+qL+ sl++iR kK+++l+++i+el +k + + +en +L++k+
XP_009609340.1 83 MSEVKFWQGEAANLRQQLHYLQERHRQLLGEKLSRLSIKDLTDLENQLDMSLRSIRMKKEQILTDEIKELNRKGNIILQENIELNEKV 170
57889********************************************************************************997 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-42 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-25 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.972 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGRGKIAIRR IDNITSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TAKLYDFAST 60 SMRSVIERYN KVMEEDHNLM NPMSEVKFWQ GEAANLRQQL HYLQERHRQL LGEKLSRLSI 120 KDLTDLENQL DMSLRSIRMK KEQILTDEIK ELNRKGNIIL QENIELNEKV NLVYQENIGL 180 QKKVYGTGGR NEANETPATH ATSNGYSFIN LQLSQPQGQR KDTSSNAMKL GLQLHYKAD
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |