PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609302.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 165aa MW: 19069.3 Da PI: 6.299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	6.9e-10	38	78	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P K++ +++Le+A++Y+k L XP_009609302.1 38 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEEAIHYVKFL 78 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-13	34	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.17E-13	35	82	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	35	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-11	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-7	38	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDQQHSTCFS SSSKINDKEK KKKGSVVKLS TDPQSVAARE RRHRISDRFK ILQSLVPGGS 60 KMDTVTMLEE AIHYVKFLKM QIWLHQTMIN IVDDYDNPNY HHQLLMAHDS NFANYYPHEN 120 NSTPVENAQI NYNLDQLQLP GYAFSDGDQF QGEETNISGD AFMYY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609302.1	1e-123	PREDICTED: transcription factor bHLH140-like
TrEMBL	A0A1J6I9B0	1e-110	A0A1J6I9B0_NICAT; Transcription factor bhlh140
STRING	XP_009609302.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-31	APRATAXIN-like