PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 165aa    MW: 19069.3 Da    PI: 6.299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-103878954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  XP_009609302.1 38 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEEAIHYVKFL 78
                    699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1482978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-133488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-133582No hitNo description
Gene3DG3DSA:4.10.280.101.2E-123582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-113584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-73878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDQQHSTCFS SSSKINDKEK KKKGSVVKLS TDPQSVAARE RRHRISDRFK ILQSLVPGGS  60
KMDTVTMLEE AIHYVKFLKM QIWLHQTMIN IVDDYDNPNY HHQLLMAHDS NFANYYPHEN  120
NSTPVENAQI NYNLDQLQLP GYAFSDGDQF QGEETNISGD AFMYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609302.11e-123PREDICTED: transcription factor bHLH140-like
TrEMBLA0A1J6I9B01e-110A0A1J6I9B0_NICAT; Transcription factor bhlh140
STRINGXP_009609302.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-31APRATAXIN-like