PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609287.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 495aa    MW: 54510.3 Da    PI: 6.8991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16317364355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_009609287.1 317 VTHNQSERKRRDKINQRMKTLQKLVPNS-----SKTNKASMLDEVIEYLKQLQ 364
                     69*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.453314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-17317368No hitNo description
SuperFamilySSF474595.63E-19317381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-14317364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-19318381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-18320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MNQCVPSWDL ENSLPHQNLA LSSHSNSNNS FVTDVPWLDY EVAELTWENG QLGMHGLGPP  60
RMPNNNKPLF NSYTWDNKAH VGGTLESIVN QAIGIPHDHR KSAVDGGGDR EEDLVHCFDK  120
CLVNTQASTA TVSVAMDALV PSFAHPQNFH QGEQLPTHVP GITTCLIGDS THVISRSGDV  180
NRTDGEMSRA KIGASSYEEI SKDLEITEYF GKQEVKNLIN EKHIDAVLLR SMADPSMSRR  240
DTIDTGERDL VAERFTSTSV MSTENTSSVK KCTSKRVDEH DSVCHSRSHR QETGDGDDKR  300
KGSKISSFST KRSLSAVTHN QSERKRRDKI NQRMKTLQKL VPNSSKTNKA SMLDEVIEYL  360
KQLQAQVQAM SGMNNNMSPM LANMAVLQQQ QQLQMASMGM GMAGFMHING ALISRPNITA  420
MPMPSLLHPT ASNFMPIASG VSPGDRNINA ASLVPDPLAA FPTCQSQPMN MDAYSRIAAL  480
YQQYLQPPAN LGFKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327ERKRRD
2323328RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437770.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1S3XCW40.0A0A1S3XCW4_TOBAC; transcription factor UNE10-like
STRINGXP_009609287.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-70bHLH family protein