PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 923aa MW: 104242 Da PI: 7.8042

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.1	1.2e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e++ptf r XP_009609050.1 30 EEaKMRWLRPNEIHAILCNYKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDHPTFVR 124 45599**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_009609050.1 125 RCYWLLDKSLEHIVLVHYRETQ 146 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.772	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.5E-46	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.7E-4	367	464	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.48E-12	375	461	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.71E-16	560	676	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.9E-16	560	674	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.6E-6	561	640	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.73E-12	576	670	No hit	No description
PROSITE profile	PS50297	15.273	578	682	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3.7E-6	611	640	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.728	611	643	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.42E-6	721	824	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	758	784	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.346	774	803	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.21	776	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	796	818	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.889	797	821	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-4	798	818	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	15	875	897	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.389	877	905	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MESSRAGQLA GSDIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNYK YFNIFVKPVN 60 LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDHP 120 TFVRRCYWLL DKSLEHIVLV HYRETQETQG SPVTSVAKGS PATPVNSNSS SDPSGWVLSE 180 ECNSVDERAY GSSQHAHLEP NRDMTAKNHE QRLLEINTLE WDELLAPDNP NKLNATQEAG 240 GRASAGQQNQ FEVNGYSLND GSLSVSRVPV ASLESFVCQV AGSDTVNFNP SNDTSFRSGD 300 GQMTSNFQKN ESGVTTVGAG DSFDSLNKDG LQTQDSFGRW INYFISDSPG SADEMMTPES 360 SVTIDQSYVM QQIFNITEIS PTWALSSEET KILVIGHFPG GQSQLAKSNL FCVCADVCFP 420 AEFVQSGVYR CVISPQPPGL VNLYLSFDGN TPISQVMTYE FRAPSARKWT APLEEQSSWD 480 EFRVQMRLAH LLFSTSKSLS IFSSKVHQDS LKEAKRFVRK CSHITDNWAY LIKSIEDRKL 540 PVSHAKDCLF ELSLQTKFHE WLLERVIGGC KTSEWDEQGQ GVIHLCAILG YTWAVYPFSW 600 SGLSLDYRDK YGWTALHWAA HYGREKMVAT LLSAGAKPNL VTDPTSENPG GSTAADLASK 660 NGFEGLGAYL AEKALVAHFK DMTLAGNVSG SLQTTTEHIN SGNFTEEELY LKDTLAAYRT 720 AADAAARIQA AFREHSFKVQ TKAVESSNPE IEARNIVAAM KIQHAFRNYE SRKKLAAAAR 780 IQYRFRSWKM RKDFLNMRRH AIKIQAVFRG FQVRKQYRKI VWSVGVLEKA VLRWRLKRKG 840 FRGLQVQSSQ AVDIKPDGDV EEDFFRASRK QAEERVERSV VRVQAMFRSK RAQEEYRRMK 900 LEHDNATLEY ERASVLDPDI QIG

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MESSRAGQLA GSDIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNYK YFNIFVKPVN  60
LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDHP  120
TFVRRCYWLL DKSLEHIVLV HYRETQETQG SPVTSVAKGS PATPVNSNSS SDPSGWVLSE  180
ECNSVDERAY GSSQHAHLEP NRDMTAKNHE QRLLEINTLE WDELLAPDNP NKLNATQEAG  240
GRASAGQQNQ FEVNGYSLND GSLSVSRVPV ASLESFVCQV AGSDTVNFNP SNDTSFRSGD  300
GQMTSNFQKN ESGVTTVGAG DSFDSLNKDG LQTQDSFGRW INYFISDSPG SADEMMTPES  360
SVTIDQSYVM QQIFNITEIS PTWALSSEET KILVIGHFPG GQSQLAKSNL FCVCADVCFP  420
AEFVQSGVYR CVISPQPPGL VNLYLSFDGN TPISQVMTYE FRAPSARKWT APLEEQSSWD  480
EFRVQMRLAH LLFSTSKSLS IFSSKVHQDS LKEAKRFVRK CSHITDNWAY LIKSIEDRKL  540
PVSHAKDCLF ELSLQTKFHE WLLERVIGGC KTSEWDEQGQ GVIHLCAILG YTWAVYPFSW  600
SGLSLDYRDK YGWTALHWAA HYGREKMVAT LLSAGAKPNL VTDPTSENPG GSTAADLASK  660
NGFEGLGAYL AEKALVAHFK DMTLAGNVSG SLQTTTEHIN SGNFTEEELY LKDTLAAYRT  720
AADAAARIQA AFREHSFKVQ TKAVESSNPE IEARNIVAAM KIQHAFRNYE SRKKLAAAAR  780
IQYRFRSWKM RKDFLNMRRH AIKIQAVFRG FQVRKQYRKI VWSVGVLEKA VLRWRLKRKG  840
FRGLQVQSSQ AVDIKPDGDV EEDFFRASRK QAEERVERSV VRVQAMFRSK RAQEEYRRMK  900
LEHDNATLEY ERASVLDPDI QIG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566049	0.0	JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628583.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A344X390	0.0	A0A344X390_NICTO; Calmodulin-binding transcription activator 5
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]