PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609037.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 325aa MW: 37276.9 Da PI: 6.9826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.2e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkd+e+++ XP_009609037.1 16 LPPGFRFHPTDEELITYYLAPKVLDCNFSA-KAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCIRDKKYPTGQRTNRATEAGYWKATGKDREIFR- 108 79************************99.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+g kt+Wvmheyrl XP_009609037.1 109 SKTLVGMKKTLVFYKGRAPRGDKTNWVMHEYRL 141 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.81	16	166	IPR003441	NAC domain
Pfam	PF02365	2.4E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
METVCGFEGH EEEMELPPGF RFHPTDEELI TYYLAPKVLD CNFSAKAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDREIFRSK TLVGMKKTLV 120 FYKGRAPRGD KTNWVMHEYR LDGKYSVHNL PKSAQNECVI CRIFKKSSGG KKIAISSLIR 180 NNNMTESPRS SNLPPLMEMS PYNNQITTTT RSSGETSNSH VTCFSDSVED QKPQIHHPLA 240 CSPASVDFPK YPSNIPNQVM QPYVENFQYA DSGLMQDNSI LRFLLENNNY GSESKQNNHM 300 RGYEDHNDFN ISSAGPVDLD CLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	3e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	3e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	3e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	3e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	3e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	3e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	3e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609037.1	0.0	PREDICTED: NAC domain-containing protein 92
Refseq	XP_016440125.1	0.0	PREDICTED: NAC domain-containing protein 92
Refseq	XP_018628579.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-121	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3XJH2	0.0	A0A1S3XJH2_TOBAC; NAC domain-containing protein 92
STRING	XP_009609037.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-110	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]