PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009608937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 124aa MW: 13878.7 Da PI: 6.3849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.6 | 9.7e-10 | 60 | 115 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpk 49 lp+G++F+P+d+e++ e+Lk+kv +++ + +i+++d i++++P++Lp XP_009608937.1 60 LPAGVKFDPSDQEIL-EHLKAKVFSDThklH---PlineFIPTIDgengICYTHPEKLPG 115 799***********9.99****999994551...233333444434445*********93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-10 | 54 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.206 | 60 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MTWCNESNDQ ESLQLIKATS EEKSVIISKV DHQVRTITCP SCGHSIELQN QRGIHDLPGL 60 PAGVKFDPSD QEILEHLKAK VFSDTHKLHP LINEFIPTID GENGICYTHP EKLPGLNSNR 120 GLKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608935.1 | 6e-81 | PREDICTED: NAC domain-containing protein 73-like | ||||
Refseq | XP_009608936.1 | 6e-81 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-44 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1J6I2D3 | 1e-67 | A0A1J6I2D3_NICAT; Nac domain-containing protein 73 | ||||
STRING | XP_009608935.1 | 2e-80 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 6e-47 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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