PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009608936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 274aa MW: 31453.4 Da PI: 8.8859 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.2e-34 | 60 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk. 79 lp+G++F+P+d+e++ e+Lk+kv +++ + +i+++d i++++P++Lp +++e + +fF++ +k+y+tg+rk+r+ t+ XP_009608936.1 60 LPAGVKFDPSDQEIL-EHLKAKVFSDThklH---PlineFIPTIDgengICYTHPEKLP-GANKEGQIRHFFHRPSKAYTTGNRKRRKvdtnTEg 149 799***********9.99****999994551...233333444434445**********.445556677******************74655334 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_009608936.1 150 gETRWHKTGKTRPVFI-SGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 200 4667************.999***********66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-38 | 54 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.442 | 60 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-15 | 61 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTWCNESNDQ ESLQLIKATS EEKSVIISKV DHQVRTITCP SCGHSIELQN QRGIHDLPGL 60 PAGVKFDPSD QEILEHLKAK VFSDTHKLHP LINEFIPTID GENGICYTHP EKLPGANKEG 120 QIRHFFHRPS KAYTTGNRKR RKVDTNTEGG ETRWHKTGKT RPVFISGVLK GYKKILVLYT 180 NYGRQRKPEK TNWVMHQYHL GDNEEEKDGE LVVSKVFYQT QPRQCGSRIS LSRQDNNPII 240 KTPNLIDYYN PPFISYHVHN SSMFNVTSNN ESKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608935.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Refseq | XP_009608936.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-118 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1J6I2D3 | 0.0 | A0A1J6I2D3_NICAT; Nac domain-containing protein 73 | ||||
STRING | XP_009608935.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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