PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 274aa MW: 31453.4 Da PI: 8.8859

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.6	7.2e-34	60	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk. 79 lp+G++F+P+d+e++ e+Lk+kv +++ + +i+++d i++++P++Lp +++e + +fF++ +k+y+tg+rk+r+ t+ XP_009608935.1 60 LPAGVKFDPSDQEIL-EHLKAKVFSDThklH---PlineFIPTIDgengICYTHPEKLP-GANKEGQIRHFFHRPSKAYTTGNRKRRKvdtnTEg 149 799*********9.99999994551...233333444434445******.445556677**************74655334 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_009608935.1 150 gETRWHKTGKTRPVFI-SGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 200 4667********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-38	54	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.442	60	219	IPR003441	NAC domain
Pfam	PF02365	4.8E-15	61	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MTWCNESNDQ ESLQLIKATS EEKSVIISKV DHQVRTITCP SCGHSIELQN QRGIHDLPGL 60 PAGVKFDPSD QEILEHLKAK VFSDTHKLHP LINEFIPTID GENGICYTHP EKLPGANKEG 120 QIRHFFHRPS KAYTTGNRKR RKVDTNTEGG ETRWHKTGKT RPVFISGVLK GYKKILVLYT 180 NYGRQRKPEK TNWVMHQYHL GDNEEEKDGE LVVSKVFYQT QPRQCGSRIS LSRQDNNPII 240 KTPNLIDYYN PPFISYHVHN SSMFNVTSNN ESKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608935.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_009608936.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1J6I2D3	0.0	A0A1J6I2D3_NICAT; Nac domain-containing protein 73
STRING	XP_009608935.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]