PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608935.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 274aa    MW: 31453.4 Da    PI: 8.8859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.2e-34602001128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk. 79 
                     lp+G++F+P+d+e++ e+Lk+kv +++   +        +i+++d    i++++P++Lp  +++e +  +fF++ +k+y+tg+rk+r+    t+ 
  XP_009608935.1  60 LPAGVKFDPSDQEIL-EHLKAKVFSDThklH---PlineFIPTIDgengICYTHPEKLP-GANKEGQIRHFFHRPSKAYTTGNRKRRKvdtnTEg 149
                     799***********9.99****999994551...233333444434445**********.445556677******************74655334 PP

             NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_009608935.1 150 gETRWHKTGKTRPVFI-SGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 200
                     4667************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3854219IPR003441NAC domain
PROSITE profilePS5100533.44260219IPR003441NAC domain
PfamPF023654.8E-1561200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTWCNESNDQ ESLQLIKATS EEKSVIISKV DHQVRTITCP SCGHSIELQN QRGIHDLPGL  60
PAGVKFDPSD QEILEHLKAK VFSDTHKLHP LINEFIPTID GENGICYTHP EKLPGANKEG  120
QIRHFFHRPS KAYTTGNRKR RKVDTNTEGG ETRWHKTGKT RPVFISGVLK GYKKILVLYT  180
NYGRQRKPEK TNWVMHQYHL GDNEEEKDGE LVVSKVFYQT QPRQCGSRIS LSRQDNNPII  240
KTPNLIDYYN PPFISYHVHN SSMFNVTSNN ESKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608935.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_009608936.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1J6I2D30.0A0A1J6I2D3_NICAT; Nac domain-containing protein 73
STRINGXP_009608935.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]