PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009608878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 322aa MW: 35404.1 Da PI: 10.067 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 88.3 | 1e-27 | 154 | 208 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR++Rak e kk k rkpylh SRh hA+rRpRg+gGrF XP_009608878.1 154 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 208 69*******************9666.555.6*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-30 | 151 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.964 | 152 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-21 | 155 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-23 | 155 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-21 | 185 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTIMHTLFSS KGNEGIVQNP VATLSTTVPW WSSGLVSQSS SAEHSELPKG NATEFTIFSV 60 SPSGDWKSSG YGQNQSNIQA VANMDYRGQF ELGFGQSLIS AKYPYGGEQS VGLFSAYGPQ 120 LSRNVQNSTV NGAQTLYVNM GRVMLPLNLA SDEGPIFVNA KQYHGILRRR KSRAKEMEKK 180 ALKPRKPYLH LSRHLHAMRR PRGCGGRFLN TRKMNGTMKG GKTTDTVKTG DVYSFYPIGS 240 QNSEVLQSDS SNLSSPKETT GSRLCHSSEV TNMYCRRNLD PFPFQDLRPS VQPIPDMMNT 300 GHGILMAGKW VSAADSCCNL KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 3e-16 | 153 | 209 | 2 | 60 | HAPB protein |
4g92_A | 3e-16 | 153 | 209 | 2 | 60 | HAPB protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489758 | 1e-171 | AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608878.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_009608879.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
TrEMBL | A0A1S4C4N9 | 0.0 | A0A1S4C4N9_TOBAC; nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
STRING | XP_009608878.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 4e-38 | nuclear factor Y, subunit A10 |